Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq326 221 1e-52 seq129 134 1e-26 seq53 87.8 2e-12 seq429 82.4 6e-11 >seq326 Length=503882 Score = 221 bits (244), Expect = 1e-52 Identities = 536/803 (67%), Gaps = 9/803 (1%) Strand=Plus/Minus Query 102164 ACGCCCGTCCACCCGCGGCCGTACATGGCGACGCCCACGATGAGTTTGTGGGCCGCTACG 102223 || || |||||||| || || ||||| || || || |||| | ||| | | ||| Sbjct 281331 ACTCCGGTCCACCCACGTCCATACATTGCAACACCTACGACAATTTTCTTCGGGTTTACA 281272 Query 102224 CCTTGGCCCGTGAGCAACTTCACGGCGTGGTCGGTGGTGTACAGCTCGTTGGCGTTCCAA 102283 ||||| || || ||| || || ||| ||||| || || || | |||||| Sbjct 281271 CCTTGAGCCAATAGGTACTGAACACCGAAGTCTGTGGTATAAGTTTCCTTTGAGTTCCAC 281212 Query 102284 CTGGGCGCGTACAGCGTGGTCTGGTAGCCCAAATCCGTG-TTGGACCACGCGCCCTTAAA 102342 ||| || ||||| | ||| || | | || ||| | |||||||| || |||||||| Sbjct 281211 TCGGGAGCATACAGTGCGGTTTGAT-GACCTAATGTATCATTGGACCAAGCACCCTTAAA 281153 Query 102343 ATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTGAGCCGCGTCGTACTTCACCAC 102402 ||||| ||||| | || || | || | | | | || || || | ||| | || || Sbjct 281152 GTCGTAGCTCATAACAAAAATATGGTCCATGTAATTCTGCGCAGCTTTGTAGTCTACAAC 281093 Query 102403 GGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAGCTCGTACGTCTTGTTCGTTTG 102462 |||||||| | || | |||||| || || | |||||| ||||| | ||| Sbjct 281092 TTGGATTTTGTCCCATCCAGCACTAATAGCTGATGTTAATTCGTACTTCTTGCCCATTT- 281034 Query 102463 CAGCTGC-AGTTCGTCCAGCATGGCGCGCAACTCTTTCAGCAAAACAAGGTACGTGTCGG 102521 || | | ||||| ||||| | || | ||| |||| || | || || || Sbjct 281033 CATTGGATAATTCGTTAAGCATTTCTCGAAGCTCCTTCATTAATAAAACATAGACTTCAC 280974 Query 102522 CGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAAT 102581 | || || || || | |||||| |||||||| || || || || ||||| | Sbjct 280973 CATCCTTAGGACCA---CCAAGTGTCGGGTTTGCGCCCTTACCTCCAGGGAATTCCCAGT 280917 Query 102582 CGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAAACTCTTTAACGGATTCGACAA 102641 | ||||| || || |||||||| ||||| || | || ||||| || || || | | Sbjct 280916 CTATGTCTACACCATCGAAAAATTTCCAGGTTTGAAGGAAGTCTTTTACAGAGTCAATGA 280857 Query 102642 ACACGCGC-CGCTTGTCCGCGTCGTGCATGAAATAGAACGGGTCGGACAGCGTCCAGCCG 102700 | |||||| | ||| || ||| | | ||| |||| || || | || ||||| ||| Sbjct 280856 A-ACGCGCTCTCTTTACCTTGTCATCGAAGAAGAAGAATGGATCAGCGAGGGTCCAACCG 280798 Query 102701 CCAATGGACGGCAGGATTTTCAAATGCGGGTTTGCCAGCTTGGCCGCCATCAACTGGCCA 102760 ||||| || || || || || | || || |||| | || | ||||||||||||| Sbjct 280797 CCAATAGAAGGAAGAATCTTTAGATCAGGTCTTGCTTGTTTTAAAGACATCAACTGGCCA 280738 Query 102761 AAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCCCTTTTGCGGCTTTTGTATGGCG 102820 |||||||||||||| || || ||||| | || | || ||||| || ||||||| ||| Sbjct 280737 AAGTTGCCTTTGTATGGTTCATTCCAGGAAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCA 280678 Query 102821 GCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCGGCCTTTGCACGAGCGCTGCAGC 102880 ||||| |||||||| || | || ||||||||| | ||||| |||| || | ||| | | Sbjct 280677 GCCCAGGGGTCGTGAATGGATACTTTAAAGTCTTCTCGGCCACTGCAAGATCTCTGTAAC 280618 Query 102881 GCTTCAAAACTGCCGGGAATGGTCTTGAGCGCGTCGTTTAGCCCGTCGCCGCCGCAAATC 102940 |||| ||||| || ||| || | |||||| | || || || || |||||| Sbjct 280617 GCTTGGAAACTTCCCTCAATTTCTTTCAAACTGTCGTTGATTCCATCACCACCACAAATC 280558 Query 102941 GGGATGAAGCCGTACAGCAGATG 102963 ||||| || ||||||| ||||| Sbjct 280557 GGGATAAAACCGTACAAAAGATG 280535 >seq129 Length=3256488 Score = 134 bits (148), Expect = 1e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 29044 CTGCACAAAGTCGCGGCCCTTGACGAGCAGCACGTACTCGCAGCGGTCGTACCAGCGGGC 29103 ||| || ||||||| || || || | | | ||||| |||| ||||| |||| ||||| Sbjct 1155514 CTGTACGTAGTCGCGACCTTTCACTAACTGGACGTAAGCGCATCGGTCAAACCAACGGGC 1155573 Query 29104 GTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGTCGCAGCAAAA 29163 |||||||| ||| || ||||||| |||||| |||||||| || || || ||| |||| Sbjct 1155574 GTGTTGCTCCCATGGGACGTCGTCATTTTCCCAGTCCTTCAGGCCCCCATCACAGTAAAA 1155633 Query 29164 GCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCCAACTCTTCGGG 29223 ||| || |||||||| || || ||||| || || || || || |||| |||||||| Sbjct 1155634 GCATTTGGTTTTGTCGCCGTGACCCGTGTAGAAAAAGCCAGCTTCCGCCAGTTCTTCGGG 1155693 Query 29224 CCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGCAAACGCGCGGCTTC 29277 | || || | | ||||| || ||||||||||| | ||| || || || Sbjct 1155694 CTTTTGGCGCATACTTCTAGGCCAATCGGCAAAGGTGCGAAGACGAGCAGCCTC 1155747 >seq53 Length=2198565 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || |||| ||| | ||| || | |||||| || || |||||||||||||| ||||| Sbjct 1831215 TTGCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCT 1831156 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | ||| ||| || | || |||| || || || || | ||||| | |||||||| Sbjct 1831155 GACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGT 1831096 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||||||||||| ||| || ||| || | | | || || || || Sbjct 1831095 GGAATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCA 1831036 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || ||||| || || || | ||||| ||||| ||||||||| Sbjct 1831035 ACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCATT 1830985 >seq429 Length=186180 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| | ||||| || | || || ||||| || ||||||||||| | | Sbjct 15712 CCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGAC 15653 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || || || ||||| || || |||| | | ||| ||||| || Sbjct 15652 AGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGG 15593 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || ||||| || |||||| ||||| | ||| ||| || || |||| Sbjct 15592 ATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACC 15533 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| |||||||| || || | ||||| ||||| || ||||| || Sbjct 15532 TCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATGTT 15483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422221385105168