Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq326 307 9e-79 seq53 105 5e-18 >seq326 Length=503882 Score = 307 bits (340), Expect = 9e-79 Identities = 666/986 (68%), Gaps = 18/986 (2%) Strand=Plus/Minus Query 97282 TTTG-AATTTGACGATAATCTACAACACCGTCCTCCCACGTGCCCGA-CACCGGCCCGTT 97339 |||| ||||| | ||||| || ||||| |||| ||| |||||| || | || ||| Sbjct 281430 TTTGCAATTTCCCTGTAATCGACCACACCATCCTGCCATGTGCCCTTGCAAGGTCCTGTT 281371 Query 97340 GCCAGTGCCGGAAAAATAGTTGCCATTCGTATAATTTGTTACGCCGGTCCAGCCGCGGCC 97399 || | ||| ||| | || |||| |||||||| ||| |||||||| || || || Sbjct 281370 GCGATCCCCGTGAAAGGA-TTACCATCTGTATAATTGTGTACTCCGGTCCACCCACGTCC 281312 Query 97400 GTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACGCCTTGTTCCAGTAACGCATC 97459 ||||| || || || || | ||||| || || | || ||||| ||| || | Sbjct 281311 ATACATTGCAACACCTACGACAATTTTCTTCGGGTTTACACCTTGAGCCAATAGGTACTG 281252 Query 97460 GACAGCGTAATGTGTAGTGTACAGCTCTTCCGAGTTCCAACTTGGCGCGTAGACTGTTGT 97519 ||| || | | ||| || || || | |||||||| || || || | || || Sbjct 281251 AACACCGAAGTCTGTGGTATAAGTTTCCTTTGAGTTCCACTCGGGAGCATACAGTGCGGT 281192 Query 97520 TTGGTAGCCCAAATCCGTGTTTG-ACCAAGCCCCTTTAAAATCGTAAGTCATGAGAAATA 97578 ||| | | || ||| | ||| ||||||| || ||||| ||||| |||| | ||| | Sbjct 281191 TTGAT-GACCTAATGTATCATTGGACCAAGCACCCTTAAAGTCGTAGCTCATAACAAAAA 281133 Query 97579 TTTTGTCTAATGACTTTTGCGCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAGCCCG 97638 | | ||| | | || ||||| | ||||| ||| || || ||||| | || | Sbjct 281132 TATGGTCCATGTAATTCTGCGCAGCTTTGTAGTCTACAACTTGGATTTTGTCCCATCCAG 281073 Query 97639 CGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTTTGCACTTCGAGG--TCGTCTAG 97696 | || ||||| |||||||||||| | |||| ||| || || || |||| || Sbjct 281072 CACTAATAGCTGATGTTAATTCGTACTTCTTGCCCATTT-CA-TTGGATAATTCGTTAAG 281015 Query 97697 CATTTCGCGCAGCTCATCCAACAACAGAATGTATGTTTTGGCGTCACGCTCC---GCATC 97753 |||||| || ||||| | || || | || || | | |||| ||| | | | Sbjct 281014 CATTTCTCGAAGCTCCTTCATTAATAAAACATA------GACTTCACCATCCTTAGGACC 280961 Query 97754 GCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCATC 97813 || || | |||||| || || || || || || |||||||| || | ||| |||||||| Sbjct 280960 ACCAAGTGTCGGGTTTGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATC 280901 Query 97814 AAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCTACAAAAACGTTTCTTTTTTC 97873 ||||||||||| ||| | || || || || || || | ||| ||| ||| | Sbjct 280900 GAAAAATTTCCAGGTTTGAAGGAAGTCTTTTACAGAGTCAATGAAACGCGCTCTCTTTAC 280841 Query 97874 AACGTCGTGCATGAAATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAAT 97933 ||| | | ||| |||| || || | || ||||| || || || ||||||||||| Sbjct 280840 CTTGTCATCGAAGAAGAAGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAAT 280781 Query 97934 TTTTAGATGTGGGTTTGCTAATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACGG 97993 ||||||| || ||||| ||| | |||||| || ||||| ||||||||||| || Sbjct 280780 CTTTAGATCAGGTCTTGCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGG 280721 Query 97994 TTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGAT 98053 ||| ||||| | || | || ||||| |||||||||| ||| ||||| || ||||| || Sbjct 280720 TTCATTCCAGGAAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAAT 280661 Query 98054 GGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGG 98113 || ||||| || ||||| || || ||||| |||| || | |||| |||||||| Sbjct 280660 GGATACTTTAAAGTCTTCTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTC 280601 Query 98114 TATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAA 98173 ||| ||| | |||||| |||||||| ||||| || || || || ||||||||||| Sbjct 280600 AATTTCTTTCAAACTGTCGTTGATTCCATCACCACCACAAATCGGGATAAAACCGTACAA 280541 Query 98174 CAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACC 98233 | || | |||||| || | || | ||| |||||| | | | || || || Sbjct 280540 AAGATGAGTTAAATTCGGGATTGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCC 280481 Query 98234 CCACTCGACAAAGTACGCAGCGACAA 98259 ||| || |||||||| ||| | |||| Sbjct 280480 CCATTCAACAAAGTAAGCACCAACAA 280455 >seq53 Length=2198565 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | |||||| | || ||||||||||| ||| ||| |||| || | Sbjct 1830757 AATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTC 1830816 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || |||| |||||| || || |||||| | || ||| || Sbjct 1830817 TGACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 1830876 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | || |||||||| || || || ||||||||| | || | | || ||||| Sbjct 1830877 GCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAA 1830936 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||||||||| || ||||| | |||||||| Sbjct 1830937 CATTCAAAAGGAATCAACACTTCATCTTGTGTTACG 1830972 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| |||||||| || ||| ||||| Sbjct 1830527 AAAATGCAGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTGAACCT 1830586 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| || | | || | || ||||| || || |||||| | || ||| Sbjct 1830587 TCAGACACCATTGAAAATGTTAAAGCTAAAATCCAGGACAAGGAAGGTATTCCACCAGAC 1830646 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || ||| | || |||||||| || || || ||||||||| | || | | || ||| Sbjct 1830647 CAGCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTAC 1830706 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| || || ||||| | |||||||| | ||||||| Sbjct 1830707 AACATTCAAAAGGAGTCAACACTTCATCTTGTGTTACGTCTCAGAGGAGG 1830756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410760011606072