Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq53 154 2e-32 seq429 114 1e-20 seq326 104 2e-17 seq183 100 3e-16 >seq53 Length=2198565 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| | Sbjct 1830757 AATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTC 1830816 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| |||| | ||||||| ||||| || || || || | ||||| Sbjct 1830817 TGACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 1830876 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || || || ||| |||| || | |||||||| |||||||| Sbjct 1830877 GCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAA 1830936 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||||| | || || ||||| ||||| || | ||||| || Sbjct 1830937 CATTCAAAAGGAATCAACACTTCATCTTGTGTTACGTCTCAGGGGAGG 1830984 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||||||||| || ||||| ||||||||||| | || || ||| | Sbjct 1830527 AAAATGCAGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTGAACCT 1830586 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| | || | ||||| | ||||| || || || || | ||| Sbjct 1830587 TCAGACACCATTGAAAATGTTAAAGCTAAAATCCAGGACAAGGAAGGTATTCCACCAGAC 1830646 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| ||||||| || || || ||| |||| || | |||||||| |||||| Sbjct 1830647 CAGCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTAC 1830706 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| || |||||| | || || ||||| ||||| || Sbjct 1830707 AACATTCAAAAGGAGTCAACACTTCATCTTGTGTTACG 1830744 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| || || || ||||||||||| | || || ||| | | Sbjct 1830985 AATGCAAATTTTTGTTAAAACACTGACAGGAAAAACCATCACATTGGAGGTTGAACCTTC 1831044 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| | || | ||||| | ||||| || || || || | ||||| Sbjct 1831045 AGACACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCA 1831104 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| || || || |||| || | || || || |||||||| Sbjct 1831105 GCAACGTCTTATCTTCGCTGGAAAGCAATTGGAAGATGGCCGAACGCTGTCAGACTACAA 1831164 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| || ||||| | || ||||||| || | || |||| || ||| Sbjct 1831165 CATTCAAAAGGAATCAACCTTGCATCTTGTACTCCGTCTGAGAGGTGGC 1831213 >seq429 Length=186180 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || || || ||||| |||||||| || ||||||||| | || || || | Sbjct 15481 GAAACATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATCACCCTAGAGGTGGAGG 15540 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || |||||| | ||| | |||| || || | || || ||||| ||||| | | Sbjct 15541 CCTCCGACACTATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCTG 15600 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||| || || | || | ||| || ||||| || || || | ||| ||||| ||||| Sbjct 15601 ACCAACAGCGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGGCGTACCCTGTCCGACT 15660 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 | |||||||||||||| | || || || | |||||| Sbjct 15661 ATAACATCCAGAAGGAATCTACACTACACTTGGTGTTG 15698 >seq326 Length=503882 Score = 104 bits (114), Expect = 2e-17 Identities = 277/421 (66%), Gaps = 2/421 (0%) Strand=Plus/Minus Query 65530 CGGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTCGAACAGCTT 65589 |||||| |||||||| || || || || |||||||| | ||| | || ||||| | || Sbjct 280951 CGGGTTTGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTT 280892 Query 65590 CCACGTCTGCAGAAACTcgcgcgccgactcgacgaa-cgcgcggcgcgcgctcgcgTCGT 65648 ||| || || || || || | || || | ||| ||||| | | | ||| | Sbjct 280891 CCAGGTTTGAAGGAAGTCTTTTACAGAGTCAATGAAACGCGCT-CTCTTTACCTTGTCAT 280833 Query 65649 GCATGTGATAAAACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCAGGT 65708 | | | || ||||| | |||||||| ||||| || || || || | || | Sbjct 280832 CGAAGAAGAAGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGAT 280773 Query 65709 GCGGGTGCGCCTTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCTCC 65768 || || | || | | ||||| |||||| |||||||| ||||| || || ||| Sbjct 280772 CAGGTCTTGCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCC 280713 Query 65769 ACGCGGTCACGCCCTTTTGCGGCTTCTGCACGGCCGCCCACGGGTCGTGCACCGCCAGCT 65828 | | | | || ||||| || || || | ||| ||||| |||||||| | | | | Sbjct 280712 AGGAAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTT 280653 Query 65829 TGAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGACT 65888 | ||||| || ||||| ||| || | ||| | ||| | ||| || ||| | || | Sbjct 280652 TAAAGTCTTCTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTT 280593 Query 65889 TGAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATGCG 65948 | | ||||||||||| || || || || || ||||| | || ||||||| ||||| | Sbjct 280592 TCAAACTGTCGTTGATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAG 280533 Query 65949 T 65949 | Sbjct 280532 T 280532 >seq183 Length=738700 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 116735 GAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAAC 116794 ||| | || ||||| ||||| || |||| || || || || || ||||| ||||| Sbjct 170889 GAGAGGCACTTCATTAAGCATGTATTGGCTTTCTTTGCTGCATCAGATGGCATAGTCAAT 170948 Query 116795 GAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTAC 116854 || |||||||| || | ||| | || ||||| || || | || || | || ||||| Sbjct 170949 GAAAATCTGGTTGAAAGGTTCTCCCAAGAGGTACAAGTAACAGAAGCCAGATGTTTCTAT 171008 Query 116855 GGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACG 116914 ||||||||||| || ||||| || || || || ||||||||||| ||||| || || Sbjct 171009 GGCTTTCAGATTGCAATGGAAAATGTACATTCAGAAATGTATTCCCTACTCATTGATACA 171068 Query 116915 TAC 116917 ||| Sbjct 171069 TAC 171071 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116588 CGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATG 116647 ||||| || || ||||| || || || || || || ||||||||||| || |||| ||| Sbjct 170573 CGCGAAAATCCTCGCCGTTTTGTTATGTTTCCTATTCAATACCCGGATATTTGGCAAATG 170632 Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGG 116702 || |||||||| || || || |||||||| || || || |||||| | || |||| Sbjct 170633 TATAAAAAGGCAGAAGCTTCTTTCTGGACTGTTGAAGAAGTGGACTTATCGAAGG 170687 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 116960 GAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGA 117019 ||||| | || || || || ||||||| || ||||| || | ||||| || ||| | Sbjct 171304 GAGACTCTTCCATGTGTAAAGAAGAAGGCAGATTGGGCTCTCCAGTGGATAGCAAGCAAA 171363 Query 117020 GAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCG 117079 || | || || || | | || || || || || || ||||| | ||||| || Sbjct 171364 TCTGCTACATTTGGTGAAAGAATTGTAGCATTTGCCGCTGTTGAGGGAATTTTCTTCTCT 171423 Query 117080 GGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 || ||||| || | ||||||||||| || || | || || ||||| ||||| || ||| Sbjct 171424 GGAAGTTTTGCTTCAATATTTTGGCTGAAAAAGAGAGGACTAATGCCTGGCCTAACCTTC 171483 Query 117140 AGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||||| || | || || ||||| |||| Sbjct 171484 AGCAATGAAATGATTTCAAGGGATGAGG 171511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515171877116480