Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1173 113 3e-20 >seq1173 Length=128733 Score = 113 bits (124), Expect = 3e-20 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 97115 CAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCC 97174 |||| | || || |||||| || |||| | ||| || ||||| |||||||| || | Sbjct 62608 CAGTTATGTGAGCTATCATATGTGTCAATATGGCATAACTGGCAATATTAAAAGGTACAC 62667 Query 97175 CTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACAT 97234 | |||||||||||||| ||||||||| || ||||||| || || ||| | |||| Sbjct 62668 CAAGTCCCATATCAGCACTTCTTTGATACAATAGACAGGAGAGTTTATCATTAGCTACAT 62727 Query 97235 AAAACTGACTCAATAC-ATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTC 97293 ||||||| ||| || ||| || || || || |||||||| || ||| | ||| Sbjct 62728 GAAACTGA-GCAAGACAATGGCAAGGTGGTAATGCCATTTTATCAAGATCAGATGGGTTC 62786 Query 97294 CAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGT 97331 || | |||||| || |||||||| || | | ||||||| Sbjct 62787 CAGGAACACATTAATATTCTTCTGTCTGCT-GGTTTGT 62823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346752944192360