Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1173 125 1e-23 seq53 125 1e-23 >seq1173 Length=128733 Score = 125 bits (138), Expect = 1e-23 Identities = 182/254 (72%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 205443 AGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACC 205502 ||||| || || ||||||| ||||||| |||||| |||| |||||| |||||||| Sbjct 62609 AGTTATGTGAGCTATCATATGTGTCAATATGGCATAACTGGCAATATTAAAAGGTACACC 62668 Query 205503 TAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTAC 205562 | ||||||||||| ||||||||||| | |||| | ||| ||||| |||| ||| Sbjct 62669 AAGTCCCATATCAGCACTTCTTTGATACAATAGACAGG--AGA-GTTTATCATTAGCTAC 62725 Query 205563 ATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATT 205622 |||||| || ||| |||||| |||||||||| |||| || |||| ||| || || Sbjct 62726 ATGAAACTGAGCAAGACAATGGCAAGGTGGTAATGCCATTTTATCAAGATCAGATGGGTT 62785 Query 205623 CCAGGCTGTTAATATTATATTTCTAGATTCAGGtttatttttta---ttttatttatAAT 205679 ||||| | || ||| |||| | | ||||| ||| | | || ||||||||| Sbjct 62786 CCAGGAACACATTAATATTCTTCTGTCTGCTGGTTTGTTTCTGAAATATTGATTTATAAT 62845 Query 205680 ATGTGTTAATTGAT 205693 | |||||||| Sbjct 62846 AACATATAATTGAT 62859 >seq53 Length=2198565 Score = 125 bits (138), Expect = 1e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || ||||| ||||||||||| || || |||| | ||||| Sbjct 1830757 AATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTC 1830816 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| ||||||||||| || |||||||| ||||| || || Sbjct 1830817 TGACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 1830876 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||| ||||| || || || ||| | || || | ||| || || Sbjct 1830877 GCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAA 1830936 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754 |||||||| |||||||| | ||| | || |||||| Sbjct 1830937 CATTCAAAAGGAATCAACACTTCATCTTGTGTTACGT 1830973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755386611366400