Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq429 120 3e-22 seq326 120 3e-22 seq53 116 3e-21 >seq429 Length=186180 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | |||||||||||||| | |||||| || || || ||||| || ||| Sbjct 15713 ACCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGA 15654 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || ||| ||| || || ||||| |||||| | || | |||||| || || || || Sbjct 15653 CAGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGG 15594 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || |||||||| || || || || || | ||||| ||||| | | ||| || Sbjct 15593 GATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCAC 15534 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| | ||| | || || || || || ||||| ||||| ||||||||| Sbjct 15533 CTCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATG 15485 >seq326 Length=503882 Score = 120 bits (132), Expect = 3e-22 Identities = 327/492 (66%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 21581 GCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGACAAGGTGCCGGCG 21640 || |||||||| ||||||||||| || | ||| ||| ||||| ||| | || Sbjct 280463 GCTTACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCGTGGACCGTATACCAATC 280522 Query 21641 CCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGCGACGGCATCAAC 21700 |||||| || | ||| | | ||||| || | ||||| || || || || || |||||| Sbjct 280523 CCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAAC 280582 Query 21701 GACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCGTGTGCGGGTCGG 21760 ||| | ||| | || ||||| | || || || | || || || || Sbjct 280583 GACAGTTTGAAAGAAATTGAGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCGA 280642 Query 21761 GCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAGCCCCAAAAGGGC 21820 | || || || || | || ||||| || ||||| || ||||||| || ||||| || Sbjct 280643 GAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGGA 280702 Query 21821 GTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATGGCAATGAAGAGG 21880 | || || ||||| ||||| ||||||||||||||||| || ||||| | | || Sbjct 280703 CTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACAA 280762 Query 21881 GCCAATCCTCACATTAA-AGTGTTCGCATCGATCGGCGGATGGACTCTGTCCGATCCATT 21939 || | ||| | | || | | ||| | || || ||||| ||||| || | |||||||| Sbjct 280763 GCAAGACCTGATCTAAAGATTCTTC-CTTCTATTGGCGGTTGGACCCTCGCTGATCCATT 280821 Query 21940 TTATCATATGCACGACGCCGACGT-CAGA-CGGGTGTTT-ATCGATTCAGTTGAAGAATT 21996 | || | | ||| | | | || ||| | | |||| || || || || |||| || Sbjct 280822 CT-TCTTCT--TCGATGACAAGGTAAAGAGAGCGCGTTTCATTGACTCTGTAAAAGACTT 280878 Query 21997 TCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAGTTTCCCGGCGGCAA 22056 || | || ||||| || | || || || |||| || ||||| || || || || || Sbjct 280879 CCTTCAAACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAA 280938 Query 22057 GGGAGCCAACCC 22068 ||| || ||||| Sbjct 280939 GGGCGCAAACCC 280950 >seq53 Length=2198565 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 ||||| | || | ||| || || |||||||||||||| || | ||||| ||| Sbjct 1830969 AACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCT 1830910 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | ||| |||||||| |||||||||| ||||| || || || || || ||||||||| Sbjct 1830909 TCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCT 1830850 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 |||||| ||| || | ||| | |||||| | | || || || | ||| | ||| Sbjct 1830849 TGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGGTT 1830790 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || ||||| || ||||| ||||| Sbjct 1830789 TTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 ||||| | || | ||| ||||| |||||||||||||| || | ||||| ||| Sbjct 1830741 AACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCT 1830682 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | ||| |||||||| |||||||||| ||||| || || || || || |||||||| Sbjct 1830681 TCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCC 1830622 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||||| |||||| | ||| | |||||| | || || || | || | ||| Sbjct 1830621 TGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTT 1830562 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||||||||| || |||||||| Sbjct 1830561 TTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || |||||||||||||| || || || || ||| || | || |||||| Sbjct 1831182 GTTGATTCCTTTTGAATGTTGTAGTCTGACAGCGTTCGGCCATCTTCCAATTGCTTTCCA 1831123 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||| ||||| || || || || || ||||||||| ||||| |||| Sbjct 1831122 GCGAAGATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGGATTTTAGCTTTA 1831063 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | |||||| | || ||||| | || | ||||| || ||||| ||| Sbjct 1831062 ACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGTTTTTCCTGTCAGTGTT 1831003 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 1831002 TTAACAAAAATTTGCAT 1830986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433791548860816