Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq429 107 1e-18 seq53 89.7 3e-13 >seq429 Length=186180 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||||| ||||| ||||| ||| ||| ||||| ||||| ||||||||| Sbjct 15712 CCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGAC 15653 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | || || || |||||||| | ||||| ||||| || Sbjct 15652 AGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGG 15593 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | || | || | |||| | || || Sbjct 15592 ATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACC 15533 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || ||||| |||||||||||||||||||| Sbjct 15532 TCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCAT 15486 >seq53 Length=2198565 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || ||||||||||| |||||| ||| | || ||||| ||||| || ||||| Sbjct 1831177 TTCCTTTTGAATGTTGTAGTCTGACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAA 1831118 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || || || |||||||| || | | |||||||| || ||| ||||| | || Sbjct 1831117 GATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGGAT-TTTAGCTTTAACAT 1831059 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | ||| || |||| ||||||||||| || || || ||||| | Sbjct 1831058 TTTCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAA 1830999 Query 34377 CAAAGATCTGCAT 34389 |||| || ||||| Sbjct 1830998 CAAAAATTTGCAT 1830986 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||| || || ||| | || ||||||||||| || || || Sbjct 1830720 TCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAG 1830661 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 ||||| || |||||||| || | | |||||||| || ||| ||||| | || Sbjct 1830660 ATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGAT-TTTAGCTTTAACATT 1830602 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || || | ||||||||||| || || |||||||| || Sbjct 1830601 TTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTAC 1830542 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 1830541 GAAGATCTGCAT 1830530 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || ||||||||||| || || ||| | || ||||||||||| || || || Sbjct 1830949 TTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAA 1830890 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||||| || |||||||| || | | |||||||| || ||| ||||| | || Sbjct 1830889 GATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAAT-TTTAGCTTTGACAT 1830831 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | ||| || || | |||||||||||||| ||||| ||||| | Sbjct 1830830 TTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAA 1830771 Query 34377 CAAAGATCTGCAT 34389 | || || ||||| Sbjct 1830770 CGAAAATTTGCAT 1830758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323043067690880