Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq183 111 1e-19 >seq183 Length=738700 Score = 111 bits (122), Expect = 1e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || || ||||| || |||| ||||||||||||||| | ||| |||||||| |||||| Sbjct 171073 ATGTATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGA 171014 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAG 16624 || ||||| || ||||| ||||| | || |||||| || | | |||||||| | | Sbjct 171013 AAGCCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGA 170954 Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAA 16680 ||||| || ||||| ||||| || ||||| || || | || || ||||| || Sbjct 170953 TTTTCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAA 170898 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || || || ||||||||||||| ||||| | ||||||||| | ||||| ||| Sbjct 171482 AAGGTTAGGCCAGGCATTAGTCCTCTCTTTTTCAGCCAAAATATTGAAGCAAAACTTCCA 171423 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 || ||||| || || ||||| ||||||||||| || | || ||||| | || | | Sbjct 171422 GAGAAGAAAATTCCCTCAACAGCGGCAAATGCTACAATTCTTTCACCAAATGTAGCAGAT 171363 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 || ||| ||||||| | |||||||| ||| || | || ||||| | ||||| Sbjct 171362 TTGCTTGCTATCCACTGGAGAGCCCAATCTGCCTTCTTCTTTACACATGGAAGAGTCTCT 171303 Query 16466 ATTGCATTAAATAA 16479 | ||||| ||||| Sbjct 171302 ACAGCATTGAATAA 171289 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 16724 TTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTC 16783 || ||||| || || ||||| |||||||| |||||||| | |||||||||||||||| | Sbjct 170685 TTCGATAAGTCCACTTCTTCAACAGTCCAGAAAGAAGCTTCTGCCTTTTTATACATTTGC 170626 Query 16784 CATATGTCTTCGTAAACAATAGGAAACACAACA 16816 || || || ||| ||||||||||| |||| Sbjct 170625 CAAATATCCGGGTATTGAATAGGAAACATAACA 170593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462469518272800