Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq129 129 5e-25 seq429 114 1e-20 seq326 91.5 1e-13 >seq129 Length=3256488 Score = 129 bits (142), Expect = 5e-25 Identities = 288/430 (67%), Gaps = 33/430 (8%) Strand=Plus/Minus Query 13252 TGGCGGATGCCGGTTTCTTCTACACTGGCTACGGTGACAATACAAAGTGCTTCTATTGTG 13311 ||||||| || || || |||||||| || |||| ||||| || || ||||| || |||| Sbjct 1155683 TGGCGGAAGCTGGCTTTTTCTACACGGGTCACGGCGACAAAACCAAATGCTTTTACTGTG 1155624 Query 13312 ACGGCGGATTGAAAGATTGGGAGCCGGAAGATGTACCTTGGGAACAGCATGTAAGATGGT 13371 | || || |||| || ||||| || || || || ||||| || || | | |||| Sbjct 1155623 ATGGGGGCCTGAAGGACTGGGAAAATGACGACGTCCCATGGGAGCAACACGCCCGTTGGT 1155564 Query 13372 TCGACCGTTGCGCCTACGTTCAGCTAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCA 13431 | ||||| ||||| ||||| ||| |||| || ||| | |||||||||||||||||| | Sbjct 1155563 TTGACCGATGCGCTTACGTCCAGTTAGTGAAAGGTCGCGACTACGTACAGAAAGTCTTAG 1155504 Query 13432 CGGAAGC------CTGCGTGTTACCC---GGTGAGAACACTACCGTGTCAACAG------ 13476 | ||||| | || | ||| ||||| ||| ||||| | Sbjct 1155503 CCGAAGCGGCTATCGCCGAGGCGCCCAAGAAGGAGAAAGATAC---GTCAAGCGGAGACC 1155447 Query 13477 CCGCGCCAGTGTCCGAGCCTATA---CCTGAGACAAAAA------TTGAAA---AAGAGC 13524 |||| ||| ||| | ||| | || | ||||| | ||| | |||| Sbjct 1155446 CCGCTCCA---CCCGCGACTACAAACACTAACACAAACACCGCGCCTGAGAACGAAGATA 1155390 Query 13525 CCCAAGTGGAAGATTCGAAACTGTGCAAGATATGCTACGTAGAAGAGTGCATCGTGTGCT 13584 ||| ||||| || ||||| | || || || || | || ||||| | | |||||| | Sbjct 1155389 CCCCTGTGGAGGACACGAAATTATGTAAAATTTGTTTCGCCGAAGAAAGAAACGTGTGTT 1155330 Query 13585 TCGTACCGTGCGGTCACGTGGTGGCGTGTGCCAAGTGTGCGTTGAGTGTAGATAAGTGTC 13644 |||| || || || ||||||||||| |||||||| ||||| || |||||| || | Sbjct 1155329 TCGTGCCCTGTGGCCACGTGGTGGCCTGTGCCAAATGTGCCCTGTCCACAGATAAATGCC 1155270 Query 13645 CGATGTGTCG 13654 ||||||| || Sbjct 1155269 CGATGTGCCG 1155260 >seq429 Length=186180 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 || || |||||||| || || |||||||| ||||| |||||| ||| || | Sbjct 15700 CTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGACAGGGTACGCCCA 15641 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || |||||||| || ||||| ||||| ||||||||||| || || | |||||||| Sbjct 15640 TCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGGATTCCCTCCTTA 15581 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| || || ||| || | | |||| |||||||||| | ||| || Sbjct 15580 TCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACCTCTAGGGTGATG 15521 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| ||||| || || ||||||||||| |||||||| Sbjct 15520 GTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATGTT 15483 >seq326 Length=503882 Score = 91.5 bits (100), Expect = 1e-13 Identities = 314/487 (64%), Gaps = 2/487 (0%) Strand=Plus/Minus Query 6850 GTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTCCA 6909 ||| || ||||| ||||| || || |||||||| || || || || |||||||| ||||| Sbjct 280948 GTTTGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTCCA 280889 Query 6910 CGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGA-CGCTTGGCGGAGTCGTGCA 6968 || | || || || || | | || || || | ||| | ||| | | Sbjct 280888 GGTTTGAAGGAAGTCTTTTACAGAGTCAATGAA-ACGCGCTCTCTTTACCTTGTCATCGA 280830 Query 6969 TCTTGTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGATTGG 7028 | |||| || || || ||||| ||||| || || || || || | |||| | Sbjct 280829 AGAAGAAGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCAG 280770 Query 7029 GGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGTACG 7088 | | ||||| | | ||||| ||||||||| || || || || || || | | | Sbjct 280769 GTCTTGCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGG 280710 Query 7089 CCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTTTGA 7148 | || ||||||||||| |||| ||| |||| ||||| || ||||| | Sbjct 280709 AAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAA 280650 Query 7149 AATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTTCAAACGACCCCGGCACCTGTTTCA 7208 | || |||||||| ||| ||||| || ||||||| || ||| | | ||||| Sbjct 280649 AGTCTTCTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTTTCA 280590 Query 7209 AGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGGCTGA 7268 | |||||||| ||| || || || ||||| || | ||| ||||||| | ||| | | Sbjct 280589 AACTGTCGTTGATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTA 280530 Query 7269 GATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCCACAA 7328 ||| || | || | ||| ||||| ||| | || || ||||| || |||| Sbjct 280529 AATTCGGGATTGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCAACAA 280470 Query 7329 AGTACGC 7335 |||| || Sbjct 280469 AGTAAGC 280463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395039819534308