Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq326 226 2e-54 seq53 114 1e-20 seq129 109 4e-19 >seq326 Length=503882 Score = 226 bits (250), Expect = 2e-54 Identities = 771/1186 (65%), Gaps = 23/1186 (2%) Strand=Plus/Minus Query 90774 GTTCATTGTGTTGAGCAGATCACCATTATCGGCGTCAATTTCCCATGCAAACAATCCACC 90833 |||||||| ||| | | ||||| ||||| ||||| |||||||| || ||||| ||||| Sbjct 281638 GTTCATTGCGTTCAATATGTCACCGTTATCTGCGTCTATTTCCCACGCGAACAAACCACC 281579 Query 90834 CAACTTGTTTTGATCAACGTATCTGCTTTTAGCCAAAACGGAATCAACGCTGTCAAACGT 90893 | | || | |||||| | | ||| | |||||| || |||| | || Sbjct 281578 TAGGTAATTCTTTCTTACGTATTTACCTTTCTCGGTAACGGATCTCGCGTTGTCGTATGT 281519 Query 90894 GATAAGGTCGGCTTTATTTTTGTTAAAAACATATGATGCTTCGGCAACTTTGTCAAACTT 90953 | ||| || || || | || || ||||| | |||| |||||| || || | | Sbjct 281518 AACAAGTTCCCCTGTAGATGGTTTGAACACATAAGCAGCTTGGGCAACGTTATCGTAGTG 281459 Query 90954 GTACACGTACTCGTTTATAT---TTTCTTTT---ATTTGGCGATAGTCAACGACTCCATC 91007 | || | | | |||| | | | ||| |||| | || || || || ||||| Sbjct 281458 GAACTCCCATTTGTTTTGAGCAATGCCATTTGCAATTTCCCTGTAATCGACCACACCATC 281399 Query 91008 TTCCCACGTGCCCGTAACCGGACCGTTAGCGA-CACCATCAAAATAGTTATCACCTTTGT 91066 | ||| |||||| | || || | |||| | || | ||| | ||| || || | | Sbjct 281398 CTGCCATGTGCCCTTGCAAGGTCCTGTTGCGATCCCCGTGAAAGGA-TTACCATCTGTAT 281340 Query 91067 AATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGACACCAATAATTATTTTACTAG 91126 ||| || || ||||| || || || ||||| || ||||| | | ||||| | | Sbjct 281339 AATTGTGTACTCCGGTCCACCCACGTCCATACATTGCAACACCTACGACAATTTTCTTCG 281280 Query 91127 AATCAACACCTTGTTTTGTGAGCATTTGCACGGCATGATGCGTGGTGTACAACTCGTTCG 91186 | |||||||| || || || | | ||||| || || || | Sbjct 281279 GGTTTACACCTTGAGCCAATAGGTACTGAACACCGAAGTCTGTGGTATAAGTTTCCTTTG 281220 Query 91187 GGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAAATCGGT-ATTTGACCAAGCT 91245 |||||| | || || || |||| ||||||| | || ||| | ||| |||||||| Sbjct 281219 AGTTCCACTCGGGAGCATACAGTGCGGTTTGAT-GACCTAATGTATCATTGGACCAAGCA 281161 Query 91246 CCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAACTTTTGTGCAGCGTCATAA 91305 || ||||| ||||| |||| ||| | || | || | || || ||||| | || Sbjct 281160 CCCTTAAAGTCGTAGCTCATAACAAAAATATGGTCCATGTAATTCTGCGCAGCTTTGTAG 281101 Query 91306 TCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCTTGTCAATTCGTACACTTTA 91365 || |||| || ||| ||||| | || |||| || || ||| ||||||||| || Sbjct 281100 TCTACAACTTGGATTTTGTCCCATCCAGCACTAATAGCTGATGTTAATTCGTACTTCTTG 281041 Query 91366 CCTGTTTGTGCTTGCAAA--TCATCCAACATGTCACGCAACTCTTTTAGCAAAACAATGT 91423 || ||| ||| | | || | | ||| || || | ||| || | || | || | Sbjct 281040 CCCATTTCA--TTGGATAATTCGTTAAGCATTTCTCGAAGCTCCTTCATTAATAAAACAT 280983 Query 91424 ATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGCGCCTTTACCGCCCGGAA 91483 | || | || || ||| | |||| | ||| || ||||| ||||| || || | Sbjct 280982 AGACTTCACCATCC---TTAGGACCACCAAGTGTCGGGTTTGCGCCCTTACCTCCAGGGA 280926 Query 91484 ATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTGCAAAAATTCTTTAACCG 91543 ||||||| || || |||||||| || ||||||||||| ||| | || ||||| || | Sbjct 280925 ATTCCCAGTCTATGTCTACACCATCGAAAAATTTCCAGGTTTGAAGGAAGTCTTTTACAG 280866 Query 91544 AATCAACGAA-CACGTT-TCTTCGT-TTGACATCGTGCATAAAATAGAACGGGTCCGACA 91600 | |||| ||| | || | |||| ||| ||||| | || | |||| || || | | Sbjct 280865 AGTCAATGAAACGCGCTCTCTTTACCTTGTCATCGA--AGAAGA-AGAATGGATCAGCGA 280809 Query 91601 AAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGTTGGCCAACTTGGCGGCCA 91660 ||||| || || || || || | || |||| || || | || || | || Sbjct 280808 GGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCAGGTCTTGCTTGTTTTAAAGACA 280749 Query 91661 TTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGGATACACCTTTTTGTGGTT 91720 | | ||| ||||||||||| ||||| || || ||||| | || | ||||||||||||| Sbjct 280748 TCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAAAGTCCTTTTTGTGGTT 280689 Query 91721 TTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAATCATCGCGTCCTTTGCACG 91780 |||||| ||| ||||| || ||||| ||||| |||||||| || || || || |||| | Sbjct 280688 TTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTCTTCTCGGCCACTGCAAG 280629 Query 91781 ATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGGCATCGTTTAATCCATCGC 91840 ||| || || || ||||| || ||| ||| | ||||| | |||||| | Sbjct 280628 ATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTTTCAAACTGTCGTTGATTCCATCAC 280569 Query 91841 CTCCGCAAATGGGTATAAAACCGTACAACAGATGGGACAAATTTGGCAGCGGCACCTTGT 91900 | || ||||| || |||||||||||||| ||||| | ||||| || | || | || Sbjct 280568 CACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTAAATTCGGGATTGGTATACGGT 280509 Query 91901 CGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACAAAGTACGC 91946 | | ||| | || | || || ||||||||||||||||| || Sbjct 280508 CCACGGGATACTTTCTAGGATAAACTCCCCATTCAACAAAGTAAGC 280463 >seq53 Length=2198565 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||||||||| ||||||||||||||||| | | || | ||||||||| || Sbjct 1830960 TGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGC 1830901 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || | ||| || || || | |||||||| || ||||| | Sbjct 1830900 TTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTT-T 1830842 Query 18243 TGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 |||| ||| | | ||| |||||| || || ||| | ||||||| ||||||| || Sbjct 1830841 AGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGGTTTTGCCTGT 1830782 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | |||||| || |||||||||||| Sbjct 1830781 GAGTGTTTTAACGAAAATTTGCATT 1830757 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||| ||||||||||||||||| | || ||| | |||||||||||| || || Sbjct 1831182 GTTGATTCCTTTTGAATGTTGTAGTCTGACAGCGTTCGGCCATCTTCCAATTGCTTTCCA 1831123 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || ||||||| | ||| || || || | |||||||| || |||| | || || Sbjct 1831122 GCGAAGATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGGATTT-TAGCTTT 1831064 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | | ||| ||||| || || || | |||||| |||| || |||| ||| Sbjct 1831063 AACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGTTTTTCCTGTCAGTGT 1831004 Query 18308 TTTTACAAAAATTTGCATT 18326 ||| ||||||||||||||| Sbjct 1831003 TTTAACAAAAATTTGCATT 1830985 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||||||||| || ||||||||||||||||| | | || | ||||||||| || Sbjct 1830732 TGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGC 1830673 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || | ||| || || || | |||||||| || |||| | Sbjct 1830672 TTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTT-T 1830614 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| ||||| || || ||| | |||||| |||| || || Sbjct 1830613 AGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTTTTTCCCGT 1830554 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 | |||||||| || || |||||||| ||| Sbjct 1830553 AAGAGTTTTTACGAAGATCTGCATTTTAAAA 1830523 >seq129 Length=3256488 Score = 109 bits (120), Expect = 4e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 20152 AAACCAACGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCC 20211 ||||||||| |||||||| |||||||| | ||| ||||||||||| || || ||||| || Sbjct 1155562 AAACCAACGGGCGTGTTGCTCCCATGGGACGTCGTCATTTTCCCAGTCCTTCAGGCCCCC 1155621 Query 20212 ATTGCAATAAAAACACAAAGTTTTATCACCGCGCGACGTATAATAAAATCCCGCTTCGGC 20271 || || ||||| || ||||| || ||| | ||| || |||| || ||||| || Sbjct 1155622 ATCACAGTAAAAGCATTTGGTTTTGTCGCCGTGACCCGTGTAGAAAAAGCCAGCTTCCGC 1155681 Query 20272 CAATTCATCGGGCCTTTGCTTCATGCTGCGCGGCCACCCTTCAAAAGTTTTTAAACGCGC 20331 || ||| |||||| |||| ||| || | ||||| | |||| || | ||| || Sbjct 1155682 CAGTTCTTCGGGCTTTTGGCGCATACTTCTAGGCCAATCGGCAAAGGTGCGAAGACGAGC 1155741 Query 20332 AGCTTCTGATGCATA 20346 ||| || || || || Sbjct 1155742 AGCCTCGGACGCGTA 1155756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379310028322260