Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq326 214 1e-50 >seq326 Length=503882 Score = 214 bits (236), Expect = 1e-50 Identities = 783/1202 (65%), Gaps = 42/1202 (3%) Strand=Plus/Minus Query 35664 AGCCAATATGCATAGCGTTGAGCAAATCGCCGTTGTCCGCATCGATTTCCCATGCGAATA 35723 ||||| | | ||| ||||| | | || ||||| || || || |||||||| ||||| | Sbjct 281644 AGCCA-TGTTCATTGCGTTCAATATGTCACCGTTATCTGCGTCTATTTCCCACGCGAACA 281586 Query 35724 ATCCGCCGAGTCTACGCTGAAGCACGTATTCGCCTTTGGCCAGTACCGATCTTTCGCTGT 35783 | || || || | || ||||||| ||||| | || ||||| || ||| Sbjct 281585 AACCACCTAGGTAATTCTTTCTTACGTATTTACCTTTCTCGGTAACGGATCTCGCGTTGT 281526 Query 35784 CATACGATATTAAGT-CGCCAGAGGCGCGGTCGAATACGTACGCAGCCTTGGCCACGTCG 35842 | || | || |||| | || | | | | ||| || || ||||| | ||| |||| Sbjct 281525 CGTATG-TAACAAGTTCCCCTGTAGATGGTTTGAACACATAAGCAGCTTGGGCAACGTTA 281467 Query 35843 TCGAA-TG-----CGTATTCGTAACGCGAAATGTTTTTAGCAATCTGTCTGTAGTCGACC 35896 ||| | || | ||| || | | |||| || ||||| | ||||| |||||| Sbjct 281466 TCGTAGTGGAACTCCCATTTGTTTTGAGCAATGCCATTTGCAATTTCCCTGTAATCGACC 281407 Query 35897 ACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACGGCTACGCCACTGAATGGATTGTCA 35956 || || | | |||||| ||| || ||||| || | || |||| ||||| || Sbjct 281406 ACACCATCCTGCCATGTGCCCTTGCAAGGTCCTGTTGCGATCCCCGTGAAAGGATTACCA 281347 Query 35957 -CTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCGTACATTGCTACGCCCAACACGAG 36015 |||| || ||||| || || ||||| || || || |||||||| || || | || | Sbjct 281346 TCTGTA-TAATTGTGTACTCCGGTCCACCCACGTCCATACATTGCAACACCTACGACAAT 281288 Query 36016 tttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCC---ACGGCCACGTTGGCGGTGTA 36072 ||| || || || || | ||| || | | || || | || | | || | ||| || Sbjct 281287 TTTCTTCGGGTTTACACCTTGAGCCA--ATAG-GTACTGAACACCGAAGTCTGTGGTATA 281231 Query 36073 CGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTCTGATGACCGAGATCGGT-AT 36131 | ||| || | |||||| ||| | | |||||||| || |||||||| | || | || Sbjct 281230 AGTTTCCTTTGAGTTCCACTCGGGAGCATACAGTGCGGTTTGATGACCTA-ATGTATCAT 281172 Query 36132 TAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATTTTATCTAAATACTGTTGTG 36191 | |||||||| || || || || || ||||| || ||||| | || | || | || | Sbjct 281171 TGGACCAAGCACCCTTAAAGTCGTAGCTCATAACAAAAATATGGTCCATGTAATTCTGCG 281112 Query 36192 CTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGCGCTAATCGCTGTGGTGAGTT 36251 | | ||| | || | ||| ||||| ||||| ||||| |||| || | || Sbjct 281111 CAGCTTTGTAGTCTACAACTTGGATTTTGTCCCATCCAGCACTAATAGCTGATGTTAATT 281052 Query 36252 CTAAAGTACGATTCGT-----TTGTATTTGA-ACTTGATCGAGCATGGCGCGCAATTCGC 36305 | |||| ||| | || ||| || | || | ||||| | || | || Sbjct 281051 C----GTAC--TTCTTGCCCATTTCATTGGATAATTCGTTAAGCATTTCTCGAAGCTCCT 280998 Query 36306 CCA---ATAAAGCGATATACGTGTTATTGTCGCGTTCCACATCGCCAACGTTTGGATTGG 36362 || ||||| | ||| || | | || | | || | |||| | || || | Sbjct 280997 TCATTAATAAAAC-ATAGACTTC--ACCATC-CTTAGGAC--CACCAAGTGTCGGGTTTG 280944 Query 36363 CGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAAAATTTCCATGTCA 36422 |||| || || || || |||||||| || || || | || |||||||||||||| || Sbjct 280943 CGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTCCAGGTTT 280884 Query 36423 ACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTTCGCGCATCGT-GCATATGA 36481 | || || || || || | ||| || | || | || | | | | || Sbjct 280883 GAAGGAAGTCTTTTACAGAGTCAATGAAACGCGCTCTCTTTACCTTGTCATCGAAGAAGA 280824 Query 36482 TAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCCAACACTTTTAGATTGGGATTG 36541 |||| ||||| | || ||||||||||| || || | | | ||||||| || | Sbjct 280823 -AGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCAGGTCTT 280765 Query 36542 GCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTGTAGGGTTCGTTCCATGCGCTA 36601 || |||| | ||| || || ||||| ||||||||||| ||||| ||||| | | Sbjct 280764 GCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAA 280705 Query 36602 ACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGTGTATGGAAACTTTAAAATTG 36661 | ||| ||||||||||||| | || ||||| || ||||| ||||| |||||||| | Sbjct 280704 AGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTCT 280645 Query 36662 TCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAACTCCCCGTGATAGATTTTAAACTG 36721 || | |||| ||| ||||| || ||||||| ||||| ||| || ||| |||||| Sbjct 280644 TCTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTTTCAAACTG 280585 Query 36722 TCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCGTATAAAATGTGCGAAAGGTTC 36781 ||||| || || ||||| || |||||||| ||||| ||||| |||| || | | ||| Sbjct 280584 TCGTTGATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTAAATTC 280525 Query 36782 GGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAAACGCCCCATTCGACAAAATAG 36841 || | || | |||||||||| | || | ||||| |||||||| ||||| || Sbjct 280524 GGGATTGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCAACAAAGTAA 280465 Query 36842 GC 36843 || Sbjct 280464 GC 280463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418266539308160