Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq401 596 1e-165 seq183 152 5e-32 seq326 127 2e-24 seq53 125 6e-24 >seq401 Length=384550 Score = 596 bits (660), Expect = 1e-165 Identities = 1204/1782 (68%), Gaps = 23/1782 (1%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 ||||| || ||||| || ||||| || || || ||||| ||||| | ||||||||| || Sbjct 356777 TTGTCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCCA 356836 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG- 22224 || || || ||||| ||||| || | |||||| || || ||||||||||||||| | || Sbjct 356837 GTTTTAAGCCCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTTGGT 356896 Query 22225 -CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 || |||| | ||| || ||||| || ||||| ||||| || || | ||| || | Sbjct 356897 TCAGCAACATG--AATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCTG 356954 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| | ||| || | || |||||||| || || ||||| | | | || | Sbjct 356955 CCATTTGGATCGTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATTT 357014 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 || || || |||||| | || | || || || || || ||||| | ||||| | Sbjct 357015 CTTTTGGAATTCTTTCGATATTTTGAATTGAACCATTGTTATGAATGATAAGGTTTTTCA 357074 Query 22404 TCGTATCGTTCCACA-AACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 | || | ||| | | | | | || || |||||||| | |||||| ||||||| ||| Sbjct 357075 TGTCTTCATCCCATAGATCTGCTTGC-GTTAAATCTTTCAAAAGATGATGGTTCACTACT 357133 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 ||||| || || ||||| || | | || || ||||| ||||| || ||||| || ||| Sbjct 357134 TGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAGGAT 357193 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 ||||| ||||| || || || || || || ||||| ||||| ||||| || || | ||| Sbjct 357194 TCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCTAAAAGCAAAGAG 357253 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTT---GAGCATCGACCAGTCCCACAGATCG 22639 || | | ||||| || |||||||| ||||| ||||| | ||| | ||| || || Sbjct 357254 TTACGAAGCCCGTGTTTAGAAATTTT-CTCTTTTAGAGCAAC--CCAATTCCAAAGGTC- 357309 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCT 22699 || | | || | ||||||||| |||||||| | || ||| | ||||| | Sbjct 357310 --CGTAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGGCTATTT 357367 Query 22700 TCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCG 22759 | | || ||| ||| | | | | || | ||| ||||| || || || || || Sbjct 357368 TTAAAGGTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCCA 357427 Query 22760 TAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGC 22819 ||||| |||||||| || |||| | || |||| || | ||||| || || Sbjct 357428 TAATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCACTTTCATATGGA 357487 Query 22820 ATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879 |||||| | ||||| | || |||| ||| ||||| || || || || |||| || | Sbjct 357488 TAACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGT 357547 Query 22880 TTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTC 22939 ||| || || ||| || || || | ||||| ||||| ||| || || |||| Sbjct 357548 CTCATGTTTGAATTTTTAGCTTCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTT 357607 Query 22940 AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAA----ACGCC 22995 || ||| ||| | |||| || | ||||| | |||| | Sbjct 357608 AAATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTTTGTCT 357667 Query 22996 CGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTC 23055 |||| |||||| |||||| || || || || | ||| || || ||||| || || Sbjct 357668 TCATTG----ACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCATC 357723 Query 23056 TTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATT 23115 || || ||||| ||||||||||| || || ||||||||||| || || ||||| | || Sbjct 357724 TTCCGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTT 357783 Query 23116 GCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTC 23175 || |||||||||| || || || || || || ||||| | || || || ||||| Sbjct 357784 TTGTTGATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTC 357843 Query 23176 GACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT 23235 || || | ||| || || ||| ||| | | | || || |||| || || ||| | Sbjct 357844 TACTTGTGCCTCAATTATAGCTTTCCATAAAATTTGTGCACGAACTTGTTTAACATACTT 357903 Query 23236 GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAG 23295 |||| || || | || |||||| |||||||| | || | ||||| || || Sbjct 357904 CTTCTCTTGTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCCAGCAGTCAGCGAG 357963 Query 23296 GCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCAT 23355 ||| || || | ||||||||||||||||| || || ||||| || | |||| Sbjct 357964 GCCAGGAGAATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCTACTCTCTTCAT 358023 Query 23356 AAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCC 23415 || | ||| || ||||| ||||| ||||| || || | ||| ||||| || ||||| || Sbjct 358024 GAATAAATCAGGAATCCAAAGAGCATAGAAAAGCTCTCTGGCACGCACTTCTTCTTTCCC 358083 Query 23416 GGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAAC 23475 || |||||||| | || ||||| || || | || |||||||| || || | |||| Sbjct 358084 TGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGTTCTAAATAAAT 358143 Query 23476 GGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTA 23535 ||||| || || ||||| ||||| ||||| |||||||| || | || || |||||||| Sbjct 358144 AGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCAGTATTGTTGTA 358203 Query 23536 CACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACC 23595 ||| |||| ||| || || | || || || | || | || || | | | || Sbjct 358204 CACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCAATATATGTTCC 358263 Query 23596 TTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 || |||| | ||||| || | ||| || || || | || || ||||| | || Sbjct 358264 CTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGACTTTGATATTAATGC 358323 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 ||| || || || || ||||| ||||| || ||||| ||| | | || | || || Sbjct 358324 TGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATAGCAATTAAAAA 358383 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 ||| ||||||| || | | | || || || || ||||| || || || ||||| || || Sbjct 358384 ACAAGAAGACAGCTGAGGTCTAGGTGTTGCTGCTGAGAAAAGAGTTGGACTGGCATGAGT 358443 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 ||||||| | || | | |||||| || | |||||| ||||| ||||| ||||| || Sbjct 358444 AAAGTATTTTTCAGATAACAAATTGTATGTCTTGATGGCAGCATCTATGTCATCTCCATG 358503 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 |||||| || || || | ||| | ||| | ||| || ||||| Sbjct 358504 TATACCAATTGCCACTCTCATTAACATATGTTGTGGCCTCTC 358545 >seq183 Length=738700 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 57634 AGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGT 57693 ||||| || |||||||| || || || | |||||| | || ||||| || || | Sbjct 170854 AGGATTTGTCTGATTGGGACAGTCTAAAGGACTGTGAGAGGCACTTCATTAAGCATGTAT 170913 Query 57694 TGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCAC 57753 |||| || || || ||||| ||||| || || || || ||| |||| ||||| || || | Sbjct 170914 TGGCTTTCTTTGCTGCATCAGATGGCATAGTCAATGAAAATCTGGTTGAAAGGTTCTCCC 170973 Query 57754 AAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACG 57813 |||| || ||||| || || || ||||| || || || ||||| | || || ||||| | Sbjct 170974 AAGAGGTACAAGTAACAGAAGCCAGATGTTTCTATGGCTTTCAGATTGCAATGGAAAATG 171033 Query 57814 TGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC 57860 | ||||||||||||||||| |||||||| ||||| ||| | | |||| Sbjct 171034 TACATTCAGAAATGTATTCCCTACTCATTGATACATACATCAGGGAC 171080 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 |||||||| || | || ||||| || | ||||| |||||||| ||| |||| || || Sbjct 170561 GAACCACTATTACGCGAAAATCCTCGCCGTTTTGTTATGTTTCCTATTCAATACCCGGAT 170620 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | ||||| |||||||||||||| || || ||||| || |||||||| ||| | Sbjct 170621 ATTTGGCAAATGTATAAAAAGGCAGAAGCTTCTTTCTGGACTGTTGAAGAAGTGGACTTA 170680 Query 57630 TCTAAGG 57636 || |||| Sbjct 170681 TCGAAGG 170687 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 ||||||||||| ||| | || | |||||| |||| | || || || | || || Sbjct 171325 AAGAAGGCAGATTGGGCTCTCCAGTGGATAGCAAGCAAATCTGCTACATTTGGTGAAAGA 171384 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 | | || || ||||| || || || || ||||| || || || ||||| |||||||| Sbjct 171385 ATTGTAGCATTTGCCGCTGTTGAGGGAATTTTCTTCTCTGGAAGTTTTGCTTCAATATTT 171444 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| |||| || | || || ||||| ||||| || || ||||| || |||| || | Sbjct 171445 TGGCTGAAAAAGAGAGGACTAATGCCTGGCCTAACCTTCAGCAATGAAATGATTTCAAGG 171504 Query 58095 GACGAGG 58101 || |||| Sbjct 171505 GATGAGG 171511 >seq326 Length=503882 Score = 127 bits (140), Expect = 2e-24 Identities = 227/326 (70%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 41497 GGATTAGCGCCCTTGCCTCCGGGAAACTCCCAGTCTATGTCGACTCCGTCGAAAAATTTC 41556 || || |||||||| ||||| || || |||||||||||||| || || |||||||||||| Sbjct 280950 GGGTTTGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTC 280891 Query 41557 CAAGTGTTTAAAAATTCTCGGACCGAATCGAC-AAACGTCGCCCGGTTGGACGGATCATT 41615 || || | | || ||| || || || | ||||| ||| | || | |||| Sbjct 280890 CAGGTTTGAAGGAAGTCTTTTACAGAGTCAATGAAACG-CGCTCTCTTTACCTTGTCATC 280832 Query 41616 CATATAATAGAACGGATCCGACAGAGTCCAACCGCCTATAGACGGTAAAAT-TTTCAATG 41674 | | |||| ||||| | || ||||||||||| ||||| || | ||| ||| || Sbjct 280831 GAAGAAGAAGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATC 280772 Query 41675 ATTTCAACGATCGCTTTGCGGCCATCATCTGGCCAAAATTACCTTTGATAGGTTCGTTCC 41734 | || | | | ||| | ||||| ||||||||| || |||||| ||||| |||| Sbjct 280771 AGGTC-TTGCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCC 280713 Query 41735 AATCGCTAACGCCTTTGAGAGGTTTCTGTACTGCGGCCCAGGGATCGTGTATGGCCACTT 41794 | || ||||| | ||||| |||| || |||||||| ||||| |||| |||| Sbjct 280712 AGGAAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTT 280653 Query 41795 GGAAATCTTTTCGGCCCGCGCAAGAT 41820 || |||| |||||| ||||||| Sbjct 280652 TAAAGTCTTCTCGGCCACTGCAAGAT 280627 >seq53 Length=2198565 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || ||||||||||| |||||| | || || ||| | || Sbjct 1830758 ATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTCT 1830817 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | ||| ||||||||||| | || || |||||| Sbjct 1830818 GACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAG 1830877 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| || ||||||||||| || | || || ||| Sbjct 1830878 CAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAAC 1830937 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || |||||||| || | | || ||||| || Sbjct 1830938 ATTCAAAAGGAATCAACACTTCATCTTGTGTTACGTCTCAGGGGAGG 1830984 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || |||||||| ||||| ||||| | || |||||||| || Sbjct 1830986 ATGCAAATTTTTGTTAAAACACTGACAGGAAAAACCATCACATTGGAGGTTGAACCTTCA 1831045 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | ||| ||||||||||| | || || |||||| Sbjct 1831046 GACACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAG 1831105 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || |||||||| || || |||||||| || || || || ||| Sbjct 1831106 CAACGTCTTATCTTCGCTGGAAAGCAATTGGAAGATGGCCGAACGCTGTCAGACTACAAC 1831165 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || | ||||| ||||| | ||||| || || Sbjct 1831166 ATTCAAAAGGAATCAACCTTGCATCTTGTACTCCGTCTGAGAGGTGG 1831212 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || |||||||| ||||| || || ||||| ||||| | || |||||||| Sbjct 1830527 AAAATGCAGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTGAACCT 1830586 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | |||| || ||| | ||| |||||||||||| | || || ||| Sbjct 1830587 TCAGACACCATTGAAAATGTTAAAGCTAAAATCCAGGACAAGGAAGGTATTCCACCAGAC 1830646 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| ||||| || || ||||| || ||||||||||| || | || || Sbjct 1830647 CAGCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTAC 1830706 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||||||| || || || |||||||| || Sbjct 1830707 AACATTCAAAAGGAGTCAACACTTCATCTTGT 1830738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445725456356160