Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq401 499 4e-136 seq1092 111 2e-19 seq183 109 7e-19 >seq401 Length=384550 Score = 499 bits (552), Expect = 4e-136 Identities = 1193/1786 (67%), Gaps = 40/1786 (2%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||| | || |||||||||| | || || ||||| || || | ||| |||||||| Sbjct 356777 TTGTCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCCA 356836 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| || || | ||||| | | |||||| ||| || | ||| |||| | || Sbjct 356837 GTTTTAAGCCCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTTGGT 356896 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || | ||| ||||| | ||| || |||||||| || || || ||||| || || ||| Sbjct 356897 TCAGCAACATGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCTGCC 356956 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62275 |||| || |||| || || ||||||||| | ||||| || || || | || | || Sbjct 356957 ATTTGGATCGTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATT-TC 357015 Query 62276 TTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCAT-AATCCTA---TTCT 62328 || ||||| || |||| ||||| || ||||| | || ||| || || | Sbjct 357016 TTTTGGAATTCTTTCGATATTTTGAATTGA---ACCAT-TGTTATGAATGATAAGGTTTT 357071 Query 62329 TGATCTCATCATTCCATA-ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACT 62387 | || || |||| ||||| || | || || ||||| || | | ||||| |||| ||| Sbjct 357072 TCATGTCTTCATCCCATAGATCTGCTTGCG-TTAAATCTTTCAAAAGATGATGGTTCACT 357130 Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 ||||| |||||||| ||||| ||||| | || || || ||| | ||||| | Sbjct 357131 ACTTGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAG 357190 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 || ||||||||||| | |||||| || || ||||| || |||||||| || | | ||| Sbjct 357191 GATTCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCTAAAAGCAAA 357250 Query 62508 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCC 62567 || | ||| |||| | | ||||| ||||||||| ||||||||||||| ||| Sbjct 357251 GAGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGTCC 357310 Query 62568 GACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTAC 62626 | |||| | |||||| | |||||| |||||| | | | || | Sbjct 357311 GTAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGGCTAT-TTTT 357369 Query 62627 ATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTA 62686 | | ||| ||| ||||| || || |||| || ||| || || ||||| || || || Sbjct 357370 AAAGGTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCCATA 357429 Query 62687 ATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATA 62746 |||||| || ||||| || | | ||||| | ||| | || ||| ||||||| Sbjct 357430 ATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCACTTTCATATGGATA 357489 Query 62747 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806 | | | || || | || || || |||||||||||||| || || ||||| ||||| Sbjct 357490 ACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGTCT 357549 Query 62807 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62866 | | || || ||| ||||||||||| ||||| ||||| | ||| |||||||| || | Sbjct 357550 CATGTTTGAATTTTTAGCTTCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTTAA 357609 Query 62867 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA---TCAAATCGCCCATC 62923 |||| | |||| ||| || ||||| | || |||| | | | | || Sbjct 357610 ATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTTTGTCTTC 357669 Query 62924 TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATC 62983 | ||||||||||| | || | ||||| | |||||| || || || |||| | || Sbjct 357670 ATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCAT---CTTC 357726 Query 62984 C---GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 63040 | | |||| || || || ||||| ||||| ||||| || || || || | ||||| Sbjct 357727 CGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTTTG 357786 Query 63041 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63100 |||||| || ||| ||||||| | || ||||| || || ||||| || ||||| || | Sbjct 357787 TTGATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTCTAC 357846 Query 63101 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTAT 63155 || | || || || |||||||| | | | | || ||| ||| | | || Sbjct 357847 TTGTGCCTCAATTATAGCTTTCCATAAAATTTGTGCACGAACTTGTTTA-ACA----TAC 357901 Query 63156 CTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63215 || | ||| ||| ||| | |||||| || || || |||||||| | | Sbjct 357902 TTCTTCTCTTGTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCCAGCAGTCAGCG 357961 Query 63216 AATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63275 | | |||| | | | |||||||| | ||| | | ||| | | |||| ||| Sbjct 357962 AGGCCAGGAGAATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCTACTCTCTTC 358021 Query 63276 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTT 63334 || || | |||||||||||||||||| ||| || || ||||| | | ||| || || Sbjct 358022 ATGAATAAATCAGGAATCCAAAGAGC-ATAGAAAAGCTCTCTGGCACGCACTTCTTCTTT 358080 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 |||||||||||||| || || | || | | |||||||| |||||| ||||| || || Sbjct 358081 CCCTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGTTCTAAATA 358140 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 || || | | || || | ||| ||||| || ||||| | ||||| || || || || Sbjct 358141 AATAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCAGTATTGTT 358200 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCC 63514 || || || ||||| || | | || ||||| | ||||| || |||| ||||| Sbjct 358201 GTACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCAATATATGT 358260 Query 63515 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 ||| | || | ||| | || |||||| ||||| ||||| || || ||||| Sbjct 358261 TCCCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGACTTTGATATTAA 358320 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 ||| | | |||| || |||||||| || || || || ||||| |||| || || Sbjct 358321 TGCTGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATAGCAATTAA 358380 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGT 63693 |||||| ||||| || | | || ||| | || | | | ||| || ||| || | Sbjct 358381 AAAACAAGAAGACAGCTGAGGTCTAGGTGTTGCTGC-TGAGAAAAGAGTTGGACTGGCAT 358439 Query 63694 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63753 | ||||| |||||||||| | | |||||| |||| || || | ||||| || | Sbjct 358440 GAGTAAAGTATTTTTCAGATAACAAATTGTATGTCTTGATGGCAGCATCTATGTCATCTC 358499 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 ||| || || | ||| || | ||||||||| || || || || || Sbjct 358500 CATGTATACCAATTGCCACTCTCATTAACATATGTTGTGGCCTCTC 358545 >seq1092 Length=556928 Score = 111 bits (122), Expect = 2e-19 Identities = 245/366 (67%), Gaps = 5/366 (1%) Strand=Plus/Plus Query 155254 ATGACTCCAATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTTTAAA 155313 |||||||| ||| || |||||||| || | ||| | || | | | ||| | ||| Sbjct 531360 ATGACTCCTATTCTGCCAATGTTAGCAGAGGCCTGTAAATCAATTGAAATGGCTATGAAA 531419 Query 155314 AAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCAT 155373 || | |||| || |||||| | ||| | || || |||||||| | || ||||||||| Sbjct 531420 AAGTGTCCAAATGGTATGTTTTCTGAAATAAAGTATGATGGTGAGCGTGTCCAAGTTCAT 531479 Query 155374 aaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAA 155433 |||||| ||| |||||| | ||| | || | || |||||| | || |||||| Sbjct 531480 AAAAAAGGTAAGGAGTTTAAGTATTTTTCTCGAGCTCTAAAGCCAGTAATGTCACATAAA 531539 Query 155434 GTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTG 155493 || || || | ||||| || |||| |||||||| ||||| ||| | ||| Sbjct 531540 GTAAATCATTTTAAAGACTATTTACCACAAGCATTTCCAAAAGGGGAAGATATGATTTTG 531599 Query 155494 GATTCTGAAATTGTTCTTGTAGACG----AACATAATGTACCGCTACCGTTTGGAAGTTT 155549 ||| | ||| | | | ||||| | |||| | ||| |||||||||| | ||| Sbjct 531600 GATGCAGAAGTATTAATGGTAGATGTGAAAACAGGAAA-ACCATTACCGTTTGGCACTTT 531658 Query 155550 AGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTG 155609 |||| |||| ||| || ||| | |||| | | | | || || | | | |||||||| Sbjct 531659 AGGTGTACATAAACAGTCAGAGTTTAAAGATGCCCAAGTATGCTTATACATATTTGACTG 531718 Query 155610 TTTATA 155615 ||| || Sbjct 531719 TTTGTA 531724 >seq183 Length=738700 Score = 109 bits (120), Expect = 7e-19 Identities = 141/191 (74%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || |||||||| || | |||||| ||||||||||| ||||| || ||| Sbjct 171482 AAGGTTAGGCCAGGCATTAGTCCTCTCTTTTTCAGCCAAAATATTGAAGCAAAACTTCCA 171423 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCT 33751 || ||||| ||||| || || || ||||| || | || ||| || ||| | || | | Sbjct 171422 GAGAAGAAAATTCCCTCAACAGCGGCAAATGCTACAATTCTTTCACCAAATGTAGCAGAT 171363 Query 33752 GT-CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | | || |||||||| |||||||||| |||||||| |||||||| || | || ||| Sbjct 171362 TTGCTTGCTATCCACTGGAGAGCCCAATCTGCCTTCTTCTTTACACATGGAAGAGTCTCT 171303 Query 33810 ATGGCATTAAA 33820 | ||||| || Sbjct 171302 ACAGCATTGAA 171292 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 ||||||||| ||||| | ||||| || || |||||||| || ||||||||||| || || Sbjct 171050 ATACATTTCTGAATGTACATTTTCCATTGCAATCTGAAAGCCATAGAAACATCTGGCTTC 170991 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 || | || || ||| | || | ||| | | ||||||||| ||||| ||||| Sbjct 170990 TGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATTTTCATTGACTATGCCATCTGA 170931 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 || ||||| || ||||||||||| || || || Sbjct 170930 TGCAGCAAAGAAAGCCAATACATGCTTAATGAA 170898 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| ||||||||||| || ||||| || || || ||||||||||||||||| | | Sbjct 170685 TTCGATAAGTCCACTTCTTCAACAGTCCAGAAAGAAGCTTCTGCCTTTTTATACATTTGC 170626 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || || || | ||||| || || || |||||||| Sbjct 170625 CAAATATCCGGGTATTGAATAGGAAACATAACAAA 170591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629759751253440