Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq401 596 1e-165 seq183 109 5e-19 >seq401 Length=384550 Score = 596 bits (660), Expect = 1e-165 Identities = 1209/1782 (68%), Gaps = 36/1782 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || |||| || | ||| | || | |||||| | || |||||||||||||||| Sbjct 356780 TCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCCAGTT 356839 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || ||||||| | ||||| | | |||||| ||| |||| |||| | || | || | | Sbjct 356840 TTAAGCCCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTTGGTTCA 356899 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || | | || || |||||||| ||||| || || || || ||||||||| Sbjct 356900 GCAACATGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCTGCCATT 356959 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | ||| || || ||||| || ||||| |||| | | ||| | | | Sbjct 356960 TGGATCGTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATTTCTTTT 357019 Query 37030 GGTAAATCT----AAATGTTGAATAGAACCATTATGTAACACAATTGTA---TTCTTTAT 37082 || || ||| | || |||||| |||||||| | || | || || || || || Sbjct 357020 GG-AATTCTTTCGATATTTTGAATTGAACCATTGT-TATGA--ATGATAAGGTTTTTCAT 357075 Query 37083 GTCATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACC 37140 ||| | || ||| | || || ||| ||| ||| |||| || || | || || || Sbjct 357076 GTCTTCATCCCATAGAT--CTGCTTGCGTTAAATCTTTCAAAAGATGATGGTTCACTACT 357133 Query 37141 TGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGAC 37200 ||||| ||||| || || |||||||| |||||| || ||| | ||||||| ||| Sbjct 357134 TGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAGGAT 357193 Query 37201 TCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTA 37260 |||||||| | | ||||| | ||| ||||| |||||||| || |||| || | Sbjct 357194 TCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCTAAAAGCAAAGAG 357253 Query 37261 TTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTT 37320 || | | || ||| || |||| ||| |||||| || ||||| ||| | || || Sbjct 357254 TTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGTCCGTA 357313 Query 37321 GGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATAT 37380 || | || ||||||||||||||| | |||||| ||||| | || || ||| | Sbjct 357314 GGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGGCTATTTTTAAAG 357373 Query 37381 GTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATAT 37440 || || || | ||| |||| ||| || || | ||||| || ||||||| Sbjct 357374 GTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCCATAATAA 357433 Query 37441 ATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCC 37500 || || || || |||||| ||||||| | |||| | ||| || || ||| ||| | | Sbjct 357434 ATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCACTTTCATATGGATAACGC 357493 Query 37501 AATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA 37560 | ||| | || |||||||||||| |||||||| || || || ||||| ||| || | Sbjct 357494 ATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGTCTCATG 357553 Query 37561 TTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT 37620 || || | | |||| |||||||| ||||| | ||| || ||||| |||| |||| Sbjct 357554 TTTGAATTTTTAGCTTCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTTAAATTT 357613 Query 37621 TTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAA---TACGTTATTATTA 37677 | | | |||| || | | | ||||| || || | | | || | ||| Sbjct 357614 TGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTTTGTCTTCATTG 357673 Query 37678 ACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTA 37737 ||||| | | | | || ||| ||| |||||| ||||| ||||||||||| | Sbjct 357674 ACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCATCTTCCGAGGTG 357733 Query 37738 AATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTG 37797 ||| || ||| ||||| |||||||| || || ||||||| || | || ||||||| Sbjct 357734 TATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTTTGTTGATTG 357793 Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857 |||| | ||||| || |||||||| || ||| | || ||||| |||| ||| ||| Sbjct 357794 CTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTCTACTTGTGCC 357853 Query 37858 TCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtt--tttttCTTTG 37915 || || |||| |||||||||| || ||| ||| | | || | | || |||| | Sbjct 357854 TCAATTATAGCTTTCCATAAAATTTGTGCACGAAC--TTGTTTAACATACTTCTTCTCTT 357911 Query 37916 TTTCGTATTCTATATATAATTTGTTAAAATCAT-TCCCC--CATACATCGCATAATCCTG 37972 ||| |||| | ||| || || | ||| || | ||||| || || || | || | Sbjct 357912 GTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCCAGCAGTCAGCG---AGGCCAG 357968 Query 37973 GACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATA 38032 || | | | |||||||| ||| ||| | ||| | |||||||| | | ||| |||| Sbjct 357969 GAGAATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCTACTCTCTTCATGAATA 358028 Query 38033 AATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACAT 38092 ||||||| | ||| | ||| || | ||| ||| | |||||| |||||| || Sbjct 358029 AATCAGGAATCCAAAGAGCATAGAAAAGCTCTCTGGCACGCACTTCTTCTTTCCCTGTAT 358088 Query 38093 TCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACA 38152 ||||| ||| | || ||| || || |||||||| ||||||||||||| |||||| | | Sbjct 358089 TCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGTTCTAAATAAATAGCAA 358148 Query 38153 TTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTC 38212 ||| ||||||||||||| || || |||| | |||||| | || || || || | | Sbjct 358149 ATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCAGTATTGTTGTACACCC 358208 Query 38213 TTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAG 38272 |||||||||| |||| ||||| || || ||| | |||| ||||| || ||||||| Sbjct 358209 TTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCAATATATGTTCCCTTAG 358268 Query 38273 CTCGTATA----TTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCG 38328 ||| |||| || | | || || |||||||||||| ||||||||||| || Sbjct 358269 CTCTTATACAATGAACATGTAGA----CCAATTCCACCTGCAGACTTTGATATTAATGCT 358324 Query 38329 CATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAA 38388 ||| |||| |||||| | ||||| || ||||||||||| | || | | || |||| Sbjct 358325 GCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATAGCAATTAAAAAA 358384 Query 38389 CAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATG 38448 ||| ||||| ||||| || ||| | || || | || ||| ||||| | Sbjct 358385 CAAGAAGACAGCTGAGGTCTAGGTGTTGCTGCTGAGAAAAGAGTTGGACTGGCATGAGTA 358444 Query 38449 AACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGA 38508 || ||||||| || || |||| ||||| | || || ||||||| ||| | || || Sbjct 358445 AAGTATTTTTCAGATAACAAATTGTATGTCTTGATGGCAGCATCTATGTCATCTCCATGT 358504 Query 38509 ATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 ||||| | | || ||||||| |||||||||||| || ||| Sbjct 358505 ATACCAATTGCCACTCTCATTAACATATGTTGTGGCCTCTCT 358546 >seq183 Length=738700 Score = 109 bits (120), Expect = 5e-19 Identities = 141/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || |||| || ||||| | ||||| ||||| | ||||||||| | |||||| ||| Sbjct 171482 AAGGTTAGGCCAGGCATTAGTCCTCTCTTTTTCAGCCAAAATATTGAAGCAAAACTTCCA 171423 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT---ACCTTG 11797 || ||||| |||||||| ||||| ||||||||||| | |||||| ||| || | Sbjct 171422 GAGAAGAAAATTCCCTCAACAGCGGCAAATGCTACAATTCTTTCACCAAATGTAGCAGAT 171363 Query 11798 TTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857 ||||| | |||||| | |||||||| || ||||| ||||| ||| | || ||| Sbjct 171362 TTGCTTGCTATCCACTGGAGAGCCCAATCTGCCTTCTTCTTTACACATGGAAGAGTCTCT 171303 Query 11858 ATAGCGTTAAATAA 11871 | ||| || ||||| Sbjct 171302 ACAGCATTGAATAA 171289 Score = 86.0 bits (94), Expect = 6e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 |||||||| || | || ||||||||||||||| | ||||||||| || || ||||| Sbjct 171070 TATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGAAAG 171011 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||||||||||||| || |||| ||||| || | || ||||| | | ||| Sbjct 171010 CCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATTT 170951 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGT 12074 ||||| || || ||||| | ||||| || || | || ||| || || |||| Sbjct 170950 TCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAAGT 170896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468481765997120