Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq401 526 3e-144 seq183 129 8e-25 seq1092 111 2e-19 >seq401 Length=384550 Score = 526 bits (582), Expect = 3e-144 Identities = 1203/1791 (67%), Gaps = 50/1791 (3%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||| | || |||||||||| | || || ||||| || || | ||| |||||||| Sbjct 356777 TTGTCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCCA 356836 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| || || | ||||| | | |||||| ||| || | ||| |||| | || Sbjct 356837 GTTTTAAGCCCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTTGGT 356896 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || | ||| ||||| | ||| || |||||||| || || || ||||| || || ||| Sbjct 356897 TCAGCAACATGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCTGCC 356956 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 65068 |||| || |||| || || ||||||||| | ||||| || || || | || | || Sbjct 356957 ATTTGGATCGTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATT-TC 357015 Query 65069 TTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCAT-AATCCTA---TTCT 65121 || ||||| || |||| ||||| || ||||| || || ||| || || | Sbjct 357016 TTTTGGAATTCTTTCGATATTTTGAATTGA---ACCAT-TGTTATGAATGATAAGGTTTT 357071 Query 65122 TGATCTCATCATTCCATA-ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 65180 | || || |||| ||||| || | || || ||||| || | | ||||| | || ||| Sbjct 357072 TCATGTCTTCATCCCATAGATCTGCTTGCG-TTAAATCTTTCAAAAGATGATGGTTCACT 357130 Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 |||||||||||||| ||||| ||||| | || || || ||| | ||||| | Sbjct 357131 ACTTGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAG 357190 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 || ||||||||||| | |||||| || || ||||| || |||||||| || | | ||| Sbjct 357191 GATTCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCTAAAAGCAAA 357250 Query 65301 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 65360 || | ||| |||| | | ||||| |||||||||| ||||||||||||| ||| Sbjct 357251 GAGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGTCC 357310 Query 65361 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTAC 65419 | |||| ||| | |||||| |||||| | | | || | Sbjct 357311 GTAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGGCTAT-TTTT 357369 Query 65420 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 65479 | | ||| |||| ||||| || || |||| |||||| || || ||||| || || || Sbjct 357370 AAAGGTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCCATA 357429 Query 65480 ATAAATGGTTTCGAAGATCTTCTTATTTAGAT--CTTGTGCTTCCAGGCTATCAAATGGA 65537 |||||| || || || || | | ||||| | ||| || || || ||| ||||| Sbjct 357430 ATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCA--CTTTCATATGGA 357487 Query 65538 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 65597 ||| | | || || | || || || |||||||||||||| || || ||||| ||| Sbjct 357488 TAACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGT 357547 Query 65598 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 65657 ||| | || || ||| ||||||||||| ||||| ||||| | ||| |||||||| || Sbjct 357548 CTCATGTTTGAATTTTTAGCTTCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTT 357607 Query 65658 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA---TCAAATCGCTCA 65714 | |||| | |||| ||| || ||||| | || |||| | | | || Sbjct 357608 AAATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTTTGTCT 357667 Query 65715 TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 65774 || | ||||||||||| | || | ||||| | |||||| || || || |||| | Sbjct 357668 TCATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCAT---CT 357724 Query 65775 TCC---GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 65831 ||| | |||| || || || ||||| ||||| ||||| || || || || | ||| Sbjct 357725 TCCGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTT 357784 Query 65832 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 65891 |||||||| || ||| ||||||| | || ||||| || || ||||| || ||||| || Sbjct 357785 TGTTGATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTCT 357844 Query 65892 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGT 65946 | || | || || || |||||||| | | | | || ||| ||| | | | Sbjct 357845 ACTTGTGCCTCAATTATAGCTTTCCATAAAATTTGTGCACGAACTTGTTTA-ACA----T 357899 Query 65947 ATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 66006 | |||| ||| ||| ||| || |||||| || || || |||||||| | Sbjct 357900 ACTTCTTCTCTTGTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCCAGCAGTCAG 357959 Query 66007 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 66066 | | |||||| | | | |||||||| | ||| | | ||| | | |||| | Sbjct 357960 CGAGGCCAGGAGAATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCTACTCTCT 358019 Query 66067 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCG 66125 |||| || | |||||||||||||||||| ||| || | ||||||| | ||| || Sbjct 358020 TCATGAATAAATCAGGAATCCAAAGAGC-ATAGAAAAGCTCTCTGGCACGCACTTCTTCT 358078 Query 66126 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAG 66185 || |||||||||||||| || || | || | | ||||||| |||||| ||||| || Sbjct 358079 TTCCCTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGTTCTAAA 358138 Query 66186 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 66245 || || || | | || || | ||| ||||| || ||||| | ||||| || || || Sbjct 358139 TAAATAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCAGTATTG 358198 Query 66246 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 66305 || || || || ||||| || | | ||||| || ||||| || |||| ||||| Sbjct 358199 TTGTACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCAATATAT 358258 Query 66306 CTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 66365 |||| | || | ||| | || |||||| ||||| ||||| || || ||| Sbjct 358259 GTTCCCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGACTTTGATATT 358318 Query 66366 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 66425 ||||| | | |||| ||||||||||| ||||| ||||| ||||| |||| || | Sbjct 358319 AATGCTGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATAGCAATT 358378 Query 66426 AGAAAACAGCTAGACATTTGGTGACGACTA---GTTCCCGCATTAAATAAG-GTAGGAGA 66481 | |||||| ||||| | ||| | ||| ||| | || | | | ||| || ||| Sbjct 358379 AAAAAACAAGAAGACA---GCTGAGGTCTAGGTGTTGCTGC-TGAGAAAAGAGTTGGACT 358434 Query 66482 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 66541 || || ||||| |||||||||| | | |||||| |||| || || | ||||| || Sbjct 358435 GGCATGAGTAAAGTATTTTTCAGATAACAAATTGTATGTCTTGATGGCAGCATCTATGTC 358494 Query 66542 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 | ||| || || | ||| || | ||||||||| || || || || || Sbjct 358495 ATCTCCATGTATACCAATTGCCACTCTCATTAACATATGTTGTGGCCTCTC 358545 >seq183 Length=738700 Score = 129 bits (142), Expect = 8e-25 Identities = 162/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || || ||| | ||| ||| || || || || |||||||| || | ||||| Sbjct 171511 CCTCATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTCTTTT 171452 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| || ||||| |||||| ||||||||||| || || || ||||| | Sbjct 171451 TCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCAAATG 171392 Query 36300 CAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATCCACTTTTGAGCCCAATCGG 36356 | | || ||| || ||| | || | | | || |||||||| |||||||||| | Sbjct 171391 CTACAATTCTTTCACCAAATGTAGCAGATTTGCTTGCTATCCACTGGAGAGCCCAATCTG 171332 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||||||| |||||||| || | ||||||| |||||| || Sbjct 171331 CCTTCTTCTTTACACATGGAAGAGTCTCTACAGCATTGAA 171292 Score = 100 bits (110), Expect = 4e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 ||||||||||| | || ||||||||| ||||| | ||||| || || || ||||| Sbjct 171070 TATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGAAAG 171011 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 || ||||||||||| || || || | ||||| ||| | || | ||| | | |||| Sbjct 171010 CCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATTT 170951 Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 36600 ||||| ||||| || || || ||||| || ||||||||||| || || || Sbjct 170950 TCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAA 170898 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 || |||| ||||||||||| || ||||| || || || ||||||||||||||||| | | Sbjct 170685 TTCGATAAGTCCACTTCTTCAACAGTCCAGAAAGAAGCTTCTGCCTTTTTATACATTTGC 170626 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || || || | |||||||| ||||| |||||||| Sbjct 170625 CAAATATCCGGGTATTGAATAGGAAACATAACAAA 170591 >seq1092 Length=556928 Score = 111 bits (122), Expect = 2e-19 Identities = 245/366 (67%), Gaps = 5/366 (1%) Strand=Plus/Plus Query 158445 ATGACTCCAATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATTTAAA 158504 |||||||| ||| || |||||||| || | ||| | || | | | ||| | ||| Sbjct 531360 ATGACTCCTATTCTGCCAATGTTAGCAGAGGCCTGTAAATCAATTGAAATGGCTATGAAA 531419 Query 158505 AAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGTTCAT 158564 || | |||| || |||||| ||||| | || || ||||| ||| | || ||||||||| Sbjct 531420 AAGTGTCCAAATGGTATGTTTTCTGAAATAAAGTATGATGGTGAGCGTGTCCAAGTTCAT 531479 Query 158565 AAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAA 158624 ||||| ||| |||||| | ||| | || | || |||||| | || |||||| Sbjct 531480 AAAAAAGGTAAGGAGTTTAAGTATTTTTCTCGAGCTCTAAAGCCAGTAATGTCACATAAA 531539 Query 158625 GTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTG 158684 || || || | ||||| || |||| |||||||| ||||| ||| | ||| Sbjct 531540 GTAAATCATTTTAAAGACTATTTACCACAAGCATTTCCAAAAGGGGAAGATATGATTTTG 531599 Query 158685 GATTCTGAAATTGTTCTTGTAGACG----AACATAATGTACCGCTCCCGTTTGGAAGTTT 158740 ||| | ||| | | | ||||| | |||| | ||| | |||||||| | ||| Sbjct 531600 GATGCAGAAGTATTAATGGTAGATGTGAAAACAGGAAA-ACCATTACCGTTTGGCACTTT 531658 Query 158741 AGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTG 158800 |||| |||| ||| || ||| | |||| | | | | || || | | | |||||||| Sbjct 531659 AGGTGTACATAAACAGTCAGAGTTTAAAGATGCCCAAGTATGCTTATACATATTTGACTG 531718 Query 158801 TTTGTA 158806 |||||| Sbjct 531719 TTTGTA 531724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658112346828320