Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq326 183 3e-41 seq53 96.9 3e-15 seq429 87.8 2e-12 >seq326 Length=503882 Score = 183 bits (202), Expect = 3e-41 Identities = 340/496 (69%), Gaps = 6/496 (1%) Strand=Plus/Minus Query 20806 GGGTTCGCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCAAAGAATTTC 20865 ||||| ||||| || || || || || ||||| || ||||| || ||||| || |||||| Sbjct 280950 GGGTTTGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTC 280891 Query 20866 CACGTTTCTAGATACTCTTGGACCGAATCGAT-AAACGTTTGGCGCACGAT--CTTGTCG 20922 || |||| || | |||| || || || || ||||| || | | | |||||| Sbjct 280890 CAGGTTTGAAGGAAGTCTTTTACAGAGTCAATGAAACGC---GCTCTCTTTACCTTGTCA 280834 Query 20923 TGCATATGGAAAAATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACACTTTGAGA 20982 | | ||| ||||| || | || ||||| || || ||||| || | | || ||| Sbjct 280833 TCGAAGAAGAAGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGA 280774 Query 20983 TGCGGGTTCGCCAATTTCGCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTC 21042 | || | || ||| | ||| | |||||||||||||||||||| ||||| ||| Sbjct 280773 TCAGGTCTTGCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTC 280714 Query 21043 CATGCGCTGACACCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGAATGGCCACC 21102 || | | ||||| || ||||| |||| ||| ||||| || |||||||||| || Sbjct 280713 CAGGAAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACT 280654 Query 21103 TTAAAGTCGGCACGGCCCGCGCACGAACGTTGCAACGCTTCGAAACTGCCCGGGACACTT 21162 |||||||| | ||||| ||| || | || ||||||| |||||| ||| | | Sbjct 280653 TTAAAGTCTTCTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCT 280594 Query 21163 TTGAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTACAACAAATGC 21222 || | |||||||| || || || || || || || | ||||||||||| | ||| Sbjct 280593 TTCAAACTGTCGTTGATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGA 280534 Query 21223 GACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATACACACCCCATTCG 21282 | || ||||| | || | || |||||| ||| | ||||| || |||||||| Sbjct 280533 GTTAAATTCGGGATTGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCA 280474 Query 21283 ACAAAGTATGCTCCAA 21298 |||||||| || |||| Sbjct 280473 ACAAAGTAAGCACCAA 280458 >seq53 Length=2198565 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| || || | |||| || || || ||||||||||| || || | |||| Sbjct 1830973 ACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCC 1830914 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| | ||| || |||||| |||| ||||||||||| || || || || ||||| || Sbjct 1830913 ATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTT 1830854 Query 139669 GTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| |||| | ||| | | ||| | ||||| | || ||||| || | ||| | Sbjct 1830853 GTC-TTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGA 1830795 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || | ||||| ||||| |||||||| Sbjct 1830794 TGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| || || | |||| || ||||| ||||||||||| || || Sbjct 1830756 CCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAA 1830697 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | ||| || |||||| |||| ||||||||||| || || || Sbjct 1830696 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830637 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| ||| | | ||| | ||||| | || || || Sbjct 1830636 ATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACT 1830577 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || | ||||||||||| || ||||| Sbjct 1830576 TCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 >seq429 Length=186180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || ||||| | ||||| || || || |||||||| ||| || || | | || Sbjct 15698 CAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGACAGGGTACGCCCATC 15639 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || ||||||||||| | |||| ||| || || || || || || || || || || Sbjct 15638 TTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGGATTCCCTCCTTATC 15579 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || || | | ||| | ||||||| || ||||||||| | ||| | || Sbjct 15578 CTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACCTCTAGGGTGATGGT 15519 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || || | ||||| || || || ||||| Sbjct 15518 CTTACCCGTGAGGGTTTTCACAAAGATCTGCAT 15486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496018436521600