Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq401 569 3e-157 seq183 125 1e-23 seq1092 120 4e-22 >seq401 Length=384550 Score = 569 bits (630), Expect = 3e-157 Identities = 1218/1793 (68%), Gaps = 54/1793 (3%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||| | || |||||||||| | || || ||||| || || | ||| |||||||| Sbjct 356777 TTGTCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCCA 356836 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| || || | ||||| | | ||||| ||| || | ||| |||| | || Sbjct 356837 GTTTTAAGCCCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTTGGT 356896 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || | ||| ||||| | ||| || |||||||| || || || ||||| || || ||| Sbjct 356897 TCAGCAACATGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCTGCC 356956 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 78947 |||| || |||| || || ||||||||| | ||||| || || || | || | || Sbjct 356957 ATTTGGATCGTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATT-TC 357015 Query 78948 TTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCAT-AATCCTA---TTCT 79000 || ||||| || |||| ||||| || ||||| || || ||| || || | Sbjct 357016 TTTTGGAATTCTTTCGATATTTTGAATTGA---ACCAT-TGTTATGAATGATAAGGTTTT 357071 Query 79001 TGATCTCTTCATTCCATA-ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 79059 | || ||||||| ||||| || | || || ||||| || | | ||||| | || ||| Sbjct 357072 TCATGTCTTCATCCCATAGATCTGCTTGCG-TTAAATCTTTCAAAAGATGATGGTTCACT 357130 Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 |||||||||||||| ||||| ||||| | || || || ||| | ||||| | Sbjct 357131 ACTTGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAG 357190 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 |||||||||||||| | |||||| || || ||||| || |||||||| || | | ||| Sbjct 357191 GATTCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCTAAAAGCAAA 357250 Query 79180 CTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCA 79239 || | ||| |||| | ||||| |||||||||| |||||| |||||| || Sbjct 357251 GAGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGTCC 357310 Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT---AGCG-TATGATCC 79295 | || | |||||| | ||||||||| | |||||| ||||| || | ||| | Sbjct 357311 GTAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGGCTATTTTTA 357370 Query 79296 TGTGTA-TGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTC 79354 ||| ||| | | | ||||| ||||| ||||||||||| || || ||||| |||| Sbjct 357371 AAGGTACTGTAT-ACA----CCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTC 357425 Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 | |||||||| || || || || | | ||| | | ||| | | || ||| ||| Sbjct 357426 CATAATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCACTTTCATATG 357485 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 ||||| | | || || | || || || |||||||||||||| || || ||||| | Sbjct 357486 GATAACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGT 357545 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 ||||| | || ||| ||| ||||||||||| ||||| ||||| | ||| |||||||| | Sbjct 357546 GTCTCATGTTTGAATTTTTAGCTTCTGGAACTGGATAGTAATTCACATCAATAATTTTGT 357605 Query 79535 TGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCAT 79594 | | ||| | ||| ||| || ||||||| || ||||| | | | Sbjct 357606 TTAAATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTTTGT 357665 Query 79595 CT--ATT-ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAG 79651 || ||| ||||||||||| | || | ||||| | |||||| || || || |||| Sbjct 357666 CTTCATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCAT--- 357722 Query 79652 CATCCGCA---TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAAT 79708 | |||| |||| || ||||| |||||||| || ||||| ||||| || || | | Sbjct 357723 CTTCCGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGT 357782 Query 79709 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTT 79768 |||||||||| || ||| ||||||| | || ||||| || || || || || ||||| | Sbjct 357783 TTTGTTGATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCT 357842 Query 79769 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGACTT 79823 | | || | || || || |||||||| | | | | || ||| ||| || Sbjct 357843 CTACTTGTGCCTCAATTATAGCTTTCCATAAAATTTGTGCACGAACTTGTTTA---AC-- 357897 Query 79824 GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATC 79883 || |||| ||| ||| |||||| ||| || || || || |||||||| || Sbjct 357898 ATACTTCTTCTCTTGTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCCAGCAGTC 357957 Query 79884 GTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCG 79943 | | |||||| | | || ||||||||| | ||| | | | | | | ||||| Sbjct 357958 AGCGAGGCCAGGAGAATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCTACTCT 358017 Query 79944 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCT 80002 ||||| || | |||||||||||||||||| ||| || || ||||||| | || | Sbjct 358018 CTTCATGAATAAATCAGGAATCCAAAGAGC-ATAGAAAAGCTCTCTGGCACGCACTTCTT 358076 Query 80003 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 80062 | || |||||||||||||| || || | || | | |||||||| |||||| ||||| | Sbjct 358077 CTTTCCCTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGTTCTA 358136 Query 80063 AGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 80122 | || || || | | || |||| ||| ||||| || ||||| | ||||| || || | Sbjct 358137 AATAAATAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCAGTAT 358196 Query 80123 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATAT 80182 | || || || || ||||| || | | ||||| || ||||| || |||| |||| Sbjct 358197 TGTTGTACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCAATAT 358256 Query 80183 AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 80242 | |||| | || | ||| | || |||||| ||||| ||||| || || | Sbjct 358257 ATGTTCCCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGACTTTGATA 358316 Query 80243 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAA 80302 ||||||| | | |||| ||||||||||| ||||| || || ||||| |||| || Sbjct 358317 TTAATGCTGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATAGCAA 358376 Query 80303 GTAGAAAACAGCTAGACATTTGGTGACGACTA---GTTCCCGCATTAAATAAG-GTAGGA 80358 || |||||| ||||| | ||| | ||| ||| | || | | | ||| || ||| Sbjct 358377 TTAAAAAACAAGAAGACA---GCTGAGGTCTAGGTGTTGCTGC-TGAGAAAAGAGTTGGA 358432 Query 80359 GAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA 80418 || || ||||| |||||||||| | | |||||| |||| || || | ||||| Sbjct 358433 CTGGCATGAGTAAAGTATTTTTCAGATAACAAATTGTATGTCTTGATGGCAGCATCTATG 358492 Query 80419 TCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || | ||| || || | || || | ||||||||| || || || || || Sbjct 358493 TCATCTCCATGTATACCAATTGCCACTCTCATTAACATATGTTGTGGCCTCTC 358545 >seq183 Length=738700 Score = 125 bits (138), Expect = 1e-23 Identities = 162/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || ||| | ||| ||| || || || || |||||||| || | ||||| Sbjct 171511 CCTCATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTCTTTT 171452 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| || ||||| ||||| ||||| ||||| || || |||||||| | Sbjct 171451 TCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCAAATG 171392 Query 50102 CAACAAGTCTCTCTCCATAACTGGC-GCTGT-CATG-TATCCACTTTTGAGCCCAATCGG 50158 | |||| ||| || ||| | | || | | | | || |||||||| |||||||||| | Sbjct 171391 CTACAATTCTTTCACCAAATGTAGCAGATTTGCTTGCTATCCACTGGAGAGCCCAATCTG 171332 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||||||| |||||||| || | || |||| ||||| || Sbjct 171331 CCTTCTTCTTTACACATGGAAGAGTCTCTACAGCATTGAA 171292 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||||||||| ||||| | ||||| || || |||||||| || ||||||||||| || || Sbjct 171050 ATACATTTCTGAATGTACATTTTCCATTGCAATCTGAAAGCCATAGAAACATCTGGCTTC 170991 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 || | || || ||| | || | |||| | | ||||||||| ||||| || || Sbjct 170990 TGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATTTTCATTGACTATGCCATCTGA 170931 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 || ||||| || ||||||||||| || || || || Sbjct 170930 TGCAGCAAAGAAAGCCAATACATGCTTAATGAAGTG 170895 >seq1092 Length=556928 Score = 120 bits (132), Expect = 4e-22 Identities = 247/366 (67%), Gaps = 5/366 (1%) Strand=Plus/Plus Query 173693 ATGACTCCAATTAATCCCATGTTAGCAGAATCATGTGATTCTGTCAATAAGGCGTTTAAA 173752 |||||||| ||| || ||||||||||| | ||| | || | | | ||| | ||| Sbjct 531360 ATGACTCCTATTCTGCCAATGTTAGCAGAGGCCTGTAAATCAATTGAAATGGCTATGAAA 531419 Query 173753 AAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCAT 173812 || | |||| || |||||| | ||| | || || |||||||| | || ||||||||| Sbjct 531420 AAGTGTCCAAATGGTATGTTTTCTGAAATAAAGTATGATGGTGAGCGTGTCCAAGTTCAT 531479 Query 173813 AAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAA 173872 ||||| ||| |||||| | ||| | || | || |||||| | || |||||| Sbjct 531480 AAAAAAGGTAAGGAGTTTAAGTATTTTTCTCGAGCTCTAAAGCCAGTAATGTCACATAAA 531539 Query 173873 GTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCATATTG 173932 || || || | ||||| || |||| |||||||| ||||| ||| || ||| Sbjct 531540 GTAAATCATTTTAAAGACTATTTACCACAAGCATTTCCAAAAGGGGAAGATATGATTTTG 531599 Query 173933 GATTCTGAAATTGTTCTTGTAGACG----AACATAATGTACCGCTACCGTTTGGAAGTTT 173988 ||| | ||| | | | ||||| | |||| | ||| |||||||||| | ||| Sbjct 531600 GATGCAGAAGTATTAATGGTAGATGTGAAAACAGGA-AAACCATTACCGTTTGGCACTTT 531658 Query 173989 AGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTG 174048 |||| |||| ||| || ||| | |||| | | | | || || | | | |||||||| Sbjct 531659 AGGTGTACATAAACAGTCAGAGTTTAAAGATGCCCAAGTATGCTTATACATATTTGACTG 531718 Query 174049 TTTGTA 174054 |||||| Sbjct 531719 TTTGTA 531724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718202827010720