Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq183 127 2e-24 >seq183 Length=738700 Score = 127 bits (140), Expect = 2e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 |||||||||||||| |||| | ||||||||| || |||| |||||||| || |||||| Sbjct 171073 ATGTATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGA 171014 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAA 14261 || ||||| || ||||| ||||| | |||||| || | | || ||||| ||| | Sbjct 171013 AAGCCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGA 170954 Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14319 |||||||| ||||| ||||| || ||||| || ||||||| | ||||| |||| Sbjct 170953 TTTTCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAAGT 170896 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| || ||| | ||| || || |||| || ||||| | ||||| |||| Sbjct 171511 CCTCATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTCTTTT 171452 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||||| |||||| || || ||||| ||||||||||| || ||||| | Sbjct 171451 TCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCAAATG 171392 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14056 ||| | || ||| ||||| | || |||| | | |||||| Sbjct 171391 CTACAATTCTTTCACCAAATGTAGCAGATTTGCTTGCTATCCA 171349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479683936983200