Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq429 91.5 1e-13 >seq429 Length=186180 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || |||||||| || | || ||||| || | || || |||||| Sbjct 15712 CCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGAC 15653 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | |||||| || || |||||||| |||||||| || | || Sbjct 15652 AGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGG 15593 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | | | |||||| ||||| || Sbjct 15592 ATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACC 15533 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| || || || || || || || ||||||||||| || ||||| || Sbjct 15532 TCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATGTT 15483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381335446922184