Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq401 524 1e-143 seq183 120 4e-22 seq1092 111 2e-19 >seq401 Length=384550 Score = 524 bits (580), Expect = 1e-143 Identities = 1205/1798 (67%), Gaps = 38/1798 (2%) Strand=Plus/Plus Query 70779 TTTTATTTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAG 70838 ||| | |||| ||||| | ||||| ||||||| | || || | ||| || || | Sbjct 356764 TTTGACTTTTGATTTGTCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAA 356823 Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||| ||||| || ||||| || || | ||||| | | |||||| ||| || | ||| Sbjct 356824 ATAATACATTCCAGTTTTAAGCCCCATTTTCCATGCATGAAAATGAATAGATGTCAATTT 356883 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 ||| | || || || | |||||||| | ||||| |||||||| || || || || Sbjct 356884 TCCATAATTTGGTTCAGCAACATGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCC 356943 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 71017 ||| || || ||||||| || |||| || || ||||||||| | ||||| || || Sbjct 356944 CCTATCAGCTGCCATTTGGATCGTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAA 357003 Query 71018 CTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAAT-A 71073 || | || | |||| ||||| || |||| ||||| || ||||| || || | Sbjct 357004 GTCTCGTATT-TCTTTTGGAATTCTTTCGATATTTTGAATTGA---ACCAT-TGTTATGA 357058 Query 71074 ATCCTA---TTTTTGATCTCTTCATTCCATA-ATTTTCTCTCGGTTAAAACTCTAAGGAG 71129 || || ||||| || ||||||| ||||| || | || || ||||| || | | || Sbjct 357059 ATGATAAGGTTTTTCATGTCTTCATCCCATAGATCTGCTTGCG-TTAAATCTTTCAAAAG 357117 Query 71130 ATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGT 71189 |||| | || ||||||||||||||||| ||||| ||||| | || || || || Sbjct 357118 ATGATGGTTCACTACTTGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGT 357177 Query 71190 ATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 71249 | | ||||| | || ||||||||||| | |||||| || || ||||| || |||||||| Sbjct 357178 AAAAGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGG 357237 Query 71250 TGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCA 71309 || | | | | || | ||| || ||| ||||| |||||||||| |||| Sbjct 357238 CGCTAAAAGCAAAGAGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCA 357297 Query 71310 ATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT--- 71366 ||||||||| |||| |||| || || ||||| Sbjct 357298 ATTCCAAAGGTCCGTAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGAC 357357 Query 71367 AGCG-TATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCG 71425 || | ||| | | | ||| |||| ||||||||||| |||| |||||| || | Sbjct 357358 AGGGCTATTTTT----AAAGGTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTG 357413 Query 71426 CCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCG 71485 | ||||| |||||||||||||| || || || || | | ||| | | ||| | Sbjct 357414 CTTCTAAGGCTCCATAATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTT 357473 Query 71486 GGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATAC 71545 || ||| |||||||| | | || || | || || || |||||||| ||||| | Sbjct 357474 CACTTTCATATGGATAACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCC 357533 Query 71546 CGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATAT 71605 | || |||||||||||| | || ||| ||| ||||||||||| ||||| ||||| | || Sbjct 357534 CAATTGGTCTGTGTCTCATGTTTGAATTTTTAGCTTCTGGAACTGGATAGTAATTCACAT 357593 Query 71606 CTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAAT 71665 | |||||||| || | |||| | ||| ||| || ||||||| || ||||| Sbjct 357594 CAATAATTTTGTTTAAATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAAT 357653 Query 71666 CAAATCTCCCATCT--ATT-ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGG 71722 | | ||| ||| ||||||| ||| | || | ||||| | |||||| || | Sbjct 357654 TGTAAGTTTTGTCTTCATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAG 357713 Query 71723 CTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGG 71782 | || |||| | || |||| || |||||| ||||| ||||| ||||| || || | Sbjct 357714 CCACTTCATCTTCCGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTG 357773 Query 71783 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAG 71842 | || | ||||||||||| || ||| ||||||| | || ||||| || ||||| || | Sbjct 357774 TGCCAAGGTTTTGTTGATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTG 357833 Query 71843 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAT 71902 | ||||| || | || | || || || |||||||| | | | | || | | | Sbjct 357834 TTCCAGTCTCTACTTGTGCCTCAATTATAGCTTTCCATAAAATTTGTGCACGAACTTGTT 357893 Query 71903 TCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAG 71962 | || |||| ||| ||| |||||| ||| || || || || ||||||| || Sbjct 357894 TAACATACTTCTTCTCTTGTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCC-AG 357952 Query 71963 CA-TTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT 72021 || | | | |||||| | | | |||||||| | ||| | | | | | | | Sbjct 357953 CAGTCAGCGAGGCCAGGAGAATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCT 358012 Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 72080 |||| ||||| || | |||||||||||||||||| ||| || || ||||||| | Sbjct 358013 ACTCTCTTCATGAATAAATCAGGAATCCAAAGAGC-ATAGAAAAGCTCTCTGGCACGCAC 358071 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || || |||||||||||||| || || | || | | |||||||| |||||| || Sbjct 358072 TTCTTCTTTCCCTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGG 358131 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 ||| || || || || | | || || | ||| ||||| || ||||| | ||||| || Sbjct 358132 TTCTAAATAAATAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGC 358191 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 || || || || || || ||||| || | | ||||| || | ||||| || |||| Sbjct 358192 AGTATTGTTGTACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGC 358251 Query 72261 GATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTT 72320 ||||| |||| | || | ||| || |||||| ||||| ||||| || Sbjct 358252 AATATATGTTCCCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGACTT 358311 Query 72321 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 || |||||||| | | |||| ||||||||||| ||||| ||||| ||||| |||| Sbjct 358312 TGATATTAATGCTGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCAT 358371 Query 72381 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA---GTTCCCGCATTAAATAAG-G 72436 || || |||||| ||||| | ||| | ||| ||| | || | | | ||| | Sbjct 358372 AGCAATTAAAAAACAAGAAGACA---GCTGAGGTCTAGGTGTTGCTGC-TGAGAAAAGAG 358427 Query 72437 TAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATT 72496 | ||| || || ||||| |||||||||| | | |||||| |||| || || | | Sbjct 358428 TTGGACTGGCATGAGTAAAGTATTTTTCAGATAACAAATTGTATGTCTTGATGGCAGCAT 358487 Query 72497 CTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 |||| || | |||||| || | || || | |||||||||||| || || || || Sbjct 358488 CTATGTCATCTCCATGTATACCAATTGCCACTCTCATTAACATATGTTGTGGCCTCTC 358545 >seq183 Length=738700 Score = 120 bits (132), Expect = 4e-22 Identities = 160/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || ||| | ||| ||| || || || || |||||||| || | ||||| Sbjct 171511 CCTCATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTCTTTT 171452 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||| || ||||| |||||| ||||| ||||| || || || ||||| | Sbjct 171451 TCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCAAATG 171392 Query 42207 CAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATCCACTTTTGAGCCCAATCGG 42263 | | || ||| || ||| | || | | | || |||||||| |||||||||| | Sbjct 171391 CTACAATTCTTTCACCAAATGTAGCAGATTTGCTTGCTATCCACTGGAGAGCCCAATCTG 171332 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||||||| |||||||| || | || |||| ||||| || Sbjct 171331 CCTTCTTCTTTACACATGGAAGAGTCTCTACAGCATTGAA 171292 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 |||||||| || | || ||||||||||||||| | ||||| || || |||||||| Sbjct 171070 TATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGAAAG 171011 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 || |||||||||||||| || || || ||||| ||| | || | |||| | | |||| Sbjct 171010 CCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATTT 170951 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 42507 || || ||||| || || || ||||| || ||||||||||| || || || Sbjct 170950 TCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAA 170898 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || |||| || |||||||| || ||||| || || |||||||||||||||||||| | | Sbjct 170685 TTCGATAAGTCCACTTCTTCAACAGTCCAGAAAGAAGCTTCTGCCTTTTTATACATTTGC 170626 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 || ||||| | |||||||| || || |||||||| Sbjct 170625 CAAATATCCGGGTATTGAATAGGAAACATAACAAA 170591 >seq1092 Length=556928 Score = 111 bits (122), Expect = 2e-19 Identities = 244/364 (67%), Gaps = 5/364 (1%) Strand=Plus/Plus Query 165042 ATGACTCCAATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTTTAAA 165101 |||||||| ||| || |||||||| || | ||| | || | | | ||| | ||| Sbjct 531360 ATGACTCCTATTCTGCCAATGTTAGCAGAGGCCTGTAAATCAATTGAAATGGCTATGAAA 531419 Query 165102 AAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCAT 165161 || | |||| || |||||| | ||| | || || |||||||| | || ||||||||| Sbjct 531420 AAGTGTCCAAATGGTATGTTTTCTGAAATAAAGTATGATGGTGAGCGTGTCCAAGTTCAT 531479 Query 165162 aaaaaaaaTAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAA 165221 |||||| ||| |||||| | ||| | || | || |||||| | || |||||| Sbjct 531480 AAAAAAGGTAAGGAGTTTAAGTATTTTTCTCGAGCTCTAAAGCCAGTAATGTCACATAAA 531539 Query 165222 GTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTG 165281 || || || | ||||| || |||| |||||||| ||||| ||| | ||| Sbjct 531540 GTAAATCATTTTAAAGACTATTTACCACAAGCATTTCCAAAAGGGGAAGATATGATTTTG 531599 Query 165282 GATTCTGAAATTGTTCTTGTAGACG----AACATAATGTACCGCTACCGTTTGGAAGTTT 165337 ||| | ||| | | | ||||| | |||| | ||| |||||||||| | ||| Sbjct 531600 GATGCAGAAGTATTAATGGTAGATGTGAAAACAGGAAA-ACCATTACCGTTTGGCACTTT 531658 Query 165338 AGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTG 165397 |||| |||| ||| || ||| | |||| | | | | || || | | | |||||||| Sbjct 531659 AGGTGTACATAAACAGTCAGAGTTTAAAGATGCCCAAGTATGCTTATACATATTTGACTG 531718 Query 165398 TTTG 165401 |||| Sbjct 531719 TTTG 531722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671077555864480