Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq326 197 1e-45 seq53 113 5e-20 >seq326 Length=503882 Score = 197 bits (218), Expect = 1e-45 Identities = 343/495 (69%), Gaps = 8/495 (2%) Strand=Plus/Minus Query 19411 GGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCGAAGAATTTC 19470 ||||| ||||| || || || || || ||||| || || || || |||||||| |||||| Sbjct 280950 GGGTTTGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTC 280891 Query 19471 CACGTTTCTAGATACTCTTGGACCGAATCGAT-AAACG---TCTGCCGTACGCTCTTGTC 19526 || |||| || | |||| || || || || ||||| ||| | ||| |||||| Sbjct 280890 CAGGTTTGAAGGAAGTCTTTTACAGAGTCAATGAAACGCGCTCT-CTTTAC---CTTGTC 280835 Query 19527 GTGCATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAG 19586 | | | | ||||| || | || ||||| || || || ||||| || | ||||| Sbjct 280834 ATCGAAGAAGAAGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAG 280775 Query 19587 ATGAGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTT 19646 || ||| | || ||| | ||| | |||||||||||||||||||| ||||| || Sbjct 280774 ATCAGGTCTTGCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATT 280715 Query 19647 CCATGCGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCAC 19706 ||| | | |||||||| ||||| |||| ||| ||||| || |||||||||| || Sbjct 280714 CCAGGAAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATAC 280655 Query 19707 TTTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGT 19766 ||| ||||| | || || || || | || ||||||| |||||| ||| | Sbjct 280654 TTTAAAGTCTTCTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTC 280595 Query 19767 TTTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATG 19826 ||| | || ||||| || || ||||| || || || | ||||||||||| | ||| Sbjct 280594 TTTCAAACTGTCGTTGATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATG 280535 Query 19827 CGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTC 19886 | || ||||| | || | || |||||| ||| || ||||| || |||||||| Sbjct 280534 AGTTAAATTCGGGATTGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTC 280475 Query 19887 GACAAAGTATGCACC 19901 |||||||| ||||| Sbjct 280474 AACAAAGTAAGCACC 280460 >seq53 Length=2198565 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | | ||| || || | ||||| ||| ||||| ||||| |||||||| || Sbjct 1830984 CCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAA 1830925 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | || || |||||| |||| ||||||||||| || || || Sbjct 1830924 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830865 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | ||||| | || ||| ||| Sbjct 1830864 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACT 1830805 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| || | |||||| ||||| |||||||| Sbjct 1830804 TCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| || || | ||||| ||| || || ||||| |||||||| || Sbjct 1830756 CCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAA 1830697 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | || || |||||| |||| ||||||||||| || || || Sbjct 1830696 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830637 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||| ||| | | ||| | ||||| | ||||| ||| Sbjct 1830636 ATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACT 1830577 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | ||||||||||| || ||||| Sbjct 1830576 TCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142954 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 143013 || ||| |||| | ||| | || | ||| | || ||||| ||||| |||||||| || Sbjct 1831216 ATTGCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTC 1831157 Query 143014 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 || || | ||||| | ||| || ||||| |||| ||||||||||| || || Sbjct 1831156 TGACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGG 1831097 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 || || ||||| ||||| ||||| ||| | | ||| | ||||| | ||||| Sbjct 1831096 TGGAATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTC 1831037 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || | || || || |||| |||||| || || |||||||| Sbjct 1831036 AACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCAT 1830986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506967830727360