Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq53 132 3e-26 >seq53 Length=2198565 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || | ||| | ||| || || ||||| |||||||| || Sbjct 1831214 TGCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTG 1831155 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || ||| | ||||| ||||| || |||||| | || | |||||| ||||| || Sbjct 1831154 ACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTG 1831095 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||| ||||| ||||| ||| || ||| |||| ||||| || | ||| Sbjct 1831094 GAATACCTTCCTTGTCTTGGATTTTAGCT-TTAACATTTTCAATGGTGTCTGAAGGTTCA 1831036 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || |||||||| |||||||| ||||| |||||||||||||| Sbjct 1831035 ACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCAT 1830986 Score = 113 bits (124), Expect = 3e-20 Identities = 169/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | | ||| || | |||||| || || || ||||| |||||||| || Sbjct 1830756 CCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAA 1830697 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| || || || ||||| | || | |||||| ||||| |||| Sbjct 1830696 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830637 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||||| ||| || ||| |||| ||||| || | ||| || Sbjct 1830636 ATACCTTCCTTGTCCTGGATTTTAGCT-TTAACATTTTCAATGGTGTCTGAAGGTTCAAC 1830578 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 ||||| || |||||||| || || ||||||||||| || || ||||| ||| ||| Sbjct 1830577 TTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT-TTTAAAA 1830523 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || | |||||| || || || ||||| |||||||| || || | | | || Sbjct 1830970 TAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATC 1830911 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| || || || ||||| | || | |||||| ||||| |||||| ||||| ||||| Sbjct 1830910 TTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTC 1830851 Query 15271 ACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 |||||| ||| || ||| |||| ||||| || ||| || |||| ||| |||| Sbjct 1830850 TTGAATTTTAGCT-TTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGG 1830792 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||||| || ||||| || ||||||||||| Sbjct 1830791 TTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362146765494468