Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq129 140 3e-28 >seq129 Length=3256488 Score = 140 bits (154), Expect = 3e-28 Identities = 193/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 24860 CGATTCGGTCACGACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCA 24919 || ||||| | ||| || ||||| || ||||| || || || | | ||||| ||||| Sbjct 1155496 CGCTTCGGCTAAGACTTTCTGTACGTAGTCGCGACCTTTCACTAACTGGACGTAAGCGCA 1155555 Query 24920 GCGCCCGAACCAAAGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAA 24979 || | |||||| | |||||||| | ||| || |||| || | ||||||| | || Sbjct 1155556 TCGGTCAAACCAACGGGCGTGTTGCTCCCATGGGACGTCGTCATTTTCCCAGTCCTTCAG 1155615 Query 24980 ACCGCCGTCGCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGC 25039 || || || |||||||| |||||| |||||||| | || ||||| || |||||||| Sbjct 1155616 GCCCCCATCACAGTAAAAGCATTTGGTTTTGTCGCCGTGACCCGTGTAGAAAAAGCCAGC 1155675 Query 25040 TTCTGCAAGTTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTGCGCAA 25099 ||| || |||| ||||||| ||| || || | ||||| || | ||| ||||| | Sbjct 1155676 TTCCGCCAGTTCTTCGGGCTTTTGGCGCATACTTCTAGGCCAATCGGCAAAGGTGCGAAG 1155735 Query 25100 ACGCGCAGCTTCTATCGCATATTTGGGGTG 25129 ||| ||||| || ||| ||| ||| ||| Sbjct 1155736 ACGAGCAGCCTCGGACGCGTATCTGGAGTG 1155765 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 25232 CAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCCTC 25291 || ||| || || ||||||||||| |||||| |||| ||||| || ||| | | Sbjct 1155883 CAGAAAGGGACACTGCGGCGCCCAGCGACTATGATCCTGAGCTGGGTCATCTCCCTCGAC 1155942 Query 25292 CCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAGTA 25351 ||| | ||| || ||||| || || || ||||| ||||||||||||||| | || | ||| Sbjct 1155943 CCATCTCATTATTTCCACCTTACAGAAGGCGCAACGCACTTCGTCGCCGTGACCGAGGTA 1156002 Query 25352 GTAGAACCCATTGGCGGCCATTTGTCGCGGCGACATAAATTCTACCGTCCAATT 25405 || || ||||| || | || |||||| ||||| ||| | |||||| Sbjct 1156003 ATAAAATCCATTTCTAGCGAGAAGTTCCGGCGATATAAACGTTACTGGCCAATT 1156056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414535673451112