Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq53 114 8e-21 >seq53 Length=2198565 Score = 114 bits (126), Expect = 8e-21 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || ||||| | ||| | ||| ||||| ||||| || ||||| || || Sbjct 1830756 CCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAA 1830697 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || | || ||||| ||||||||| ||| || | |||||||||||| | || Sbjct 1830696 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830637 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || | | | || ||| || ||| ||| ||||| |||| | Sbjct 1830636 ATACCTTCCTTGTCCTGGATTTTAGC---TTTAACATTTTCAATGGTGTCTGAAGGTTCA 1830580 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || | || || |||||||||||||||||||||||||| || ||||| || Sbjct 1830579 ACTTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCATTTT 1830527 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/234 (70%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | || | |||||| || || || ||||| || ||||| || ||| Sbjct 1831212 CCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGAC 1831153 Query 33203 AAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | | ||| | || ||||||||||||||| || || | |||||||||||| | Sbjct 1831152 A----GCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGG 1831097 Query 33259 GGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315 || || ||||| || || | | | || ||| || ||| ||| ||||| || Sbjct 1831096 TGGAATACCTTCCTTGTCTTGGATTTTAGC---TTTAACATTTTCAATGGTGTCTGAAGG 1831040 Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||| |||| || || |||||||| || || ||||| || ||||||||||| Sbjct 1831039 TTCAACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCAT 1830986 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || ||||| | ||| | ||| || || ||||| || ||||| || || | || | Sbjct 1830972 CGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCA 1830913 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||||||| ||| || | |||||||||||| | || || ||||| || Sbjct 1830912 TCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTG 1830853 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| ||||| || || || || || || || Sbjct 1830852 TCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATG 1830793 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || ||||| |||||||||||||| Sbjct 1830792 GTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318749052270504