Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq326 250 2e-61 seq129 109 5e-19 >seq326 Length=503882 Score = 250 bits (276), Expect = 2e-61 Identities = 592/883 (67%), Gaps = 15/883 (2%) Strand=Plus/Minus Query 101102 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCTACG 101161 || || ||||| || || || ||||| ||||| || || | |||||| ||||| ||| Sbjct 281331 ACTCCGGTCCACCCACGTCCATACATTGCAACACCTACGACAATTTTCTTCGGGTTTACA 281272 Query 101162 CCCTGGTTCGTGAGCGATTTAACAGCGTAATCCGTGTTGTACAGCTCGTTTGGGTTCCAA 101221 || || | || | | |||| || | || ||| | || || |||| |||||| Sbjct 281271 CCTTGAGCCAATAGGTACTGAACACCGAAGTCTGTGGTATAAGTTTCCTTTGAGTTCCA- 281213 Query 101222 CTCGGC-GCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTG-ACCACGCGCCTTTGA 101279 ||||| || || |||| ||||||| || | || || ||| |||| || || || | Sbjct 281212 CTCGGGAGCATACAGTGCGGTTTGATGACCTA-ATGTATCATTGGACCAAGCACCCTTAA 281154 Query 101280 AATCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAAGATCGTATTTTACTA 101339 | ||||||||||| | ||| || | || | | | || |||||| | ||| | ||| | Sbjct 281153 AGTCGTAGCTCATAACAAAAATATGGTCCATGTAATTCTGCGCAGCTTTGTAGTCTACAA 281094 Query 101340 CAGCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGTATGTTTTGCCCGTTT 101399 | |||||||| || | |||||| || |||||||||||| | |||||| ||| Sbjct 281093 CTTGGATTTTGTCCCATCCAGCACTAATAGCTGATGTTAATTCGTACTTCTTGCCCATTT 281034 Query 101400 GCAGTTGC-AACTCGTCCAGCATTGCGCGCAATTCTTTCAGTAAAATGTTGTACGTGTCA 101458 || | | || |||| |||||| | || | || |||| ||| | || ||| Sbjct 281033 -CATTGGATAATTCGTTAAGCATTTCTCGAAGCTCCTTCATTAATAAAACATAGACTTCA 280975 Query 101459 GCGTCGCGTTCTTTGTTGC--CGAGTGTTGGGTTGGCGCCTTTACCACCCGGAAACTCCC 101516 | || ||| | | | ||||| ||||| ||||| ||||| || || || |||| Sbjct 280974 CCATC-----CTTAGGACCACCAAGTGTCGGGTTTGCGCCCTTACCTCCAGGGAATTCCC 280920 Query 101517 AATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATTCTTTGACAGAATCCA 101576 | || |||||||| || || ||||||||||| || | || ||||| ||||| || | Sbjct 280919 AGTCTATGTCTACACCATCGAAAAATTTCCAGGTTTGAAGGAAGTCTTTTACAGAGTCAA 280860 Query 101577 CAAACACACGCCGT-TTTATCGCGTCGTGCATATAATAGAACGGGTCGGACAATGTCCAG 101635 || || ||| | |||| | ||| | | | |||| || || | | ||||| Sbjct 280859 TGAA-ACGCGCTCTCTTTACCTTGTCATCGAAGAAGAAGAATGGATCAGCGAGGGTCCAA 280801 Query 101636 CCGCCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCATTAGCTGA 101695 ||||| || || || | ||| || || | || | || ||| | ||| | ||| Sbjct 280800 CCGCCAATAGAAGGAAGAATCTTTAGATCAGGTCTTGCTTGTTTTAAAGACATCAACTGG 280741 Query 101696 CCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATT 101755 ||||||||||||||||| || || ||||| | ||| | ||||| || |||||||||| Sbjct 280740 CCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAAAGTCCTTTTTGTGGTTTTTGTAAG 280681 Query 101756 GCGGCCCAAGGATCGTGGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGC 101815 || ||||| || ||||| || | |||||||| ||| ||||| |||||| | || Sbjct 280680 GCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTCTTCTCGGCCACTGCAAGATCTCTGT 280621 Query 101816 AACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAA 101875 ||||||| ||||| || || ||| | |||||| | ||||| || |||||| Sbjct 280620 AACGCTTGGAAACTTCCCTCAATTTCTTTCAAACTGTCGTTGATTCCATCACCACCACAA 280561 Query 101876 ATGGGTATGAACCCGTACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGA 101935 || || || || |||||||| | ||| | | || || | || | |||||| ||| Sbjct 280560 ATCGGGATAAAACCGTACAAAAGATGAGTTAAATTCGGGATTGGTATACGGTCCACGGGA 280501 Query 101936 AAGTTGCGACCATACACGCCCCATTCTACAAAATACGCAGCAA 101978 | || | | ||| || |||||||| ||||| || ||| ||| Sbjct 280500 TACTTTCTAGGATAAACTCCCCATTCAACAAAGTAAGCACCAA 280458 >seq129 Length=3256488 Score = 109 bits (120), Expect = 5e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 23538 TGCACGTAGTCGTAGCCCTTTACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGCG 23597 || ||||||||| || || || | | | ||||| | ||| || ||||||||||| ||| Sbjct 1155515 TGTACGTAGTCGCGACCTTTCACTAACTGGACGTAAGCGCATCGGTCAAACCAACGGGCG 1155574 Query 23598 TGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAAA 23657 |||| ||||| || ||||| |||||||||| || ||||| || || || | ||| Sbjct 1155575 TGTTGCTCCCATGGGACGTCGTCATTTTCCCAGTCCTTCAGGCCCCCATCACAGTAAAAG 1155634 Query 23658 CATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGGC 23717 |||||| |||| || | || ||||| |||| || ||||| || | || || ||| Sbjct 1155635 CATTTGGTTTTGTCGCCGTGACCCGTGTAGAAAAAGCCAGCTTCCGCCAGTTCTTCGGGC 1155694 Query 23718 TTTTGTTTTAAACTAACCGGCCAATCCACAAAAGTTTTTAAACGTGCAGACTCGG 23772 ||||| | ||| |||||||| |||| || | ||| |||| ||||| Sbjct 1155695 TTTTGGCGCATACTTCTAGGCCAATCGGCAAAGGTGCGAAGACGAGCAGCCTCGG 1155749 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 23888 CACAAACGGGCACTGCGGTGCCCATCGTTTATGATCTACGGCCGGGTCATCGCCCTCCAA 23947 || ||| || |||||||| ||||| || ||||||| || |||||||| ||||| | Sbjct 1155883 CAGAAAGGGACACTGCGGCGCCCAGCGACTATGATCCTGAGCTGGGTCATCTCCCTCGAC 1155942 Query 23948 CCAGCGCATTATTTCCACTTTGCAAAACGCGCAGCGCACCTCGTC 23992 ||| | |||||||||||| || || || ||||| ||||| ||||| Sbjct 1155943 CCATCTCATTATTTCCACCTTACAGAAGGCGCAACGCACTTCGTC 1155987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419549624392788