Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq53 145 2e-29 seq578 127 5e-24 seq183 100 7e-16 >seq53 Length=2198565 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | | || ||||| | ||| || || || ||||| || ||||| Sbjct 1830759 ATTCCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCT 1830700 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| | || ||||||||||| || || | || || || || Sbjct 1830699 GAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGT 1830640 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || ||||| |||||||| | ||| || |||||| Sbjct 1830639 GGAATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCA 1830580 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || |||| ||| || || || || ||||| |||||||| || ||||||||||| Sbjct 1830579 ACTTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCATTTT 1830527 Score = 123 bits (136), Expect = 6e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | | || ||||| | ||| ||||| || ||||| || ||||| Sbjct 1830987 ATTCCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCT 1830928 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| | || ||||||||||| || || | || || || || Sbjct 1830927 GAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGT 1830868 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || ||||| |||||||| | ||| || | ||| Sbjct 1830867 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCC 1830808 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || || || || |||||||| || || || |||||| Sbjct 1830807 ACTTCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCATT 1830757 >seq578 Length=1472074 Score = 127 bits (140), Expect = 5e-24 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 |||||||||||| ||||| ||||||||||| || ||||| || ||||| |||||||| | Sbjct 656166 CCTCTGTTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCGAT 656107 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 |||||| ||||| ||||| || ||||| ||||| || || || |||||||| || || Sbjct 656106 GGTATCCGAGGGTTCAACCTCAAGAGTAATGGTCTTCCCCGTGAGAGTTTTTACGAAGAT 656047 Query 104554 CTGCATTTTG 104563 |||||| ||| Sbjct 656046 CTGCATCTTG 656037 >seq183 Length=738700 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 ||||| || || || |||||||| || || | ||||| ||||||||||| | | ||| Sbjct 170934 GATGGCATAGTCAATGAAAATCTGGTTGAAAGGTTCTCCCAAGAGGTACAAGTAACAGAA 170993 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 ||||||||||| || || || ||||| || || |||||| | |||||||| ||||| Sbjct 170994 GCCAGATGTTTCTATGGCTTTCAGATTGCAATGGAAAATGTACATTCAGAAATGTATTCC 171053 Query 268997 CTATTAATAGATACTTATAT 269016 ||| | || ||||| || || Sbjct 171054 CTACTCATTGATACATACAT 171073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151290000158384