Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq326 255 5e-63 seq429 84.2 2e-11 seq53 82.4 6e-11 >seq326 Length=503882 Score = 255 bits (282), Expect = 5e-63 Identities = 659/988 (67%), Gaps = 21/988 (2%) Strand=Plus/Plus Query 30125 AAATTGTTGTAGCCGACACGGACGGTTCCCACTTGGAACCCATCGAATACG-TGTGGCGG 30183 ||||| |||| |||||||| || ||| ||| || |||| | || ||| | ||| | Sbjct 280359 AAATTATTGTTGCCGACACAGATGGTAGCCATTTACCACCCCTAGATTACACTCTGGATG 280418 Query 30184 GACAACAACAAACCATACACT-AGAGCGACGGATCATGTGGTGGCCGGTTACTTTGTAGA 30242 | |||| || |||| || ||| || | | | || || | | ||||||||| || Sbjct 280419 AAAAACAT-AAGCCATTCAAACAGA-CGTCTGGAAAGGTTGTTGGTGCTTACTTTGTTGA 280476 Query 30243 GTGGGGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCCCAACCTTACGCA 30302 ||||| ||||| ||| | ||||| | ||| | || |||| || | || || Sbjct 280477 ATGGGGAGTTTATCCTAGAAAGTATCCCGTGGACCGTATACCAATCCCGAATTTAACTCA 280536 Query 30303 TCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGATAGCTT-AAAGC 30361 ||||||||| || ||| | || | || ||||| ||||| || ||||| || || |||| Sbjct 280537 TCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAACGACAGTTTGAAAGA 280596 Query 30362 AAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGAGGATTTTAAAG 30421 || || ||| || | || ||||| | ||||||| || ||||| || ||||||| Sbjct 280597 AATTG-AGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCGAGAAGACTTTAAAG 280655 Query 30422 TGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGTGGGCGCTTGGG 30481 | | |||||||| |||| || | |||||||||||||||||| | | ||| Sbjct 280656 TATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGGACTTTCTTCCTGGA 280715 Query 30482 ACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGACACAA-TCCCGAC 30540 | || || || ||||| || |||||||| ||||| | |||||| | ||| || || Sbjct 280716 ATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTC-TTTAAAACAAGCAAGACCTGAT 280774 Query 30541 CTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTCTT-TAAATTGAG 30599 || | |||| | || ||||||||||| ||||| || || || ||||| | | || Sbjct 280775 CTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATTCTTCTTCTTCGA- 280833 Query 30600 TTCTGCC---GAAAATCGCGCCGTTTTCGTTGAGTCCGCACGAGAGTATTTGCGCACATG 30656 || | | ||| | || |||| |||| || | | ||| | | | || || Sbjct 280834 ---TGACAAGGTAAAGAGAGCGCGTTTCATTGACTCTGTAAAAGACTTCCTTCAAACCTG 280890 Query 30657 GAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGTAAAGGTGCTAATCC 30716 ||||||||| || || ||||||| |||||||| || || || ||||| || || || || Sbjct 280891 GAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAAGGGCGC-AAACC 280949 Query 30717 CGA-ATTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTTATTGAAAGAGCTCA 30775 ||| | | || | ||| |||||||| | | ||||| ||| |||| ||||| Sbjct 280950 CGACACTTGGTGGTCC---TAAGGATGGTGAAGTCTATGTTTTATTAATGAAGGAGCTTC 281006 Query 30776 GAGAAATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACCAGCTCACCTCGGCGA 30835 |||||||||| ||||| | || || |||| || || || ||| | | || || || | Sbjct 281007 GAGAAATGCTTAACGAATTATCCAATGAAATGGGCAAGAAGTACGAATTAACATCAGCTA 281066 Query 30836 TTAGCGCGGGGTACGATAAAATCTCTATAGTTAATTATGAAAATGCGCAAGAGTATCTTG 30895 |||| || || | || |||||| | || | || || |||||| | || | | Sbjct 281067 TTAGTGCTGGATGGGACAAAATCCAAGTTGTAGACTACAAAGCTGCGCAGAATTACATGG 281126 Query 30896 ATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCTAACACGGACTTGGGAT 30955 | || ||||||||||||| ||||| ||||| || |||||||| || || || Sbjct 281127 ACCATATTTTTGTTATGAGCTACGACTTTAAGGGTGCTTGGTCCAATGATACATTAGGTC 281186 Query 30956 ATCACACTACACTTTATTCACCCTCTTGGAACGCTGAAGAAAAATATACTGCCGAGTACG 31015 |||| || |||| ||| | ||| |||||| | | |||| ||||| | || | || Sbjct 281187 ATCAAACCGCACTGTATGCTCCCGAGTGGAACTCAAAGGAAACTTATACCACAGACTTCG 281246 Query 31016 CGACAAAGGAGTTGTTAAAACAAAACGTCAATAGTAAGAAAATAGTGCTAGCTGTTGCAA 31075 || | | || ||| || || |||||||| || ||| |||||||| Sbjct 281247 GTGTTCAGTACCTATTGGCTCAAGGTGTAAACCCGAAGAAAATTGTCGTAGGTGTTGCAA 281306 Query 31076 TGTACGGAAGAGGGTGGACGGGTGTGCA 31103 |||| ||| | |||||||| || || || Sbjct 281307 TGTATGGACGTGGGTGGACCGGAGTACA 281334 >seq429 Length=186180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48498 AACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAG 48557 ||||||| || | ||| ||||| || || ||||| ||||| || ||||| || || | Sbjct 15714 AACCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGG 15655 Query 48558 CCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| | || || || || ||||| || |||| |||||||| || || | Sbjct 15654 ACAGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTG 15595 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||| ||| || || ||| | | | || || |||| | |||| Sbjct 15594 GGATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCA 15535 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| ||||| ||||| ||||||||||| |||||||| Sbjct 15534 CCTCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCAT 15486 >seq53 Length=2198565 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 48514 TAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGT 48572 |||||| | ||||||||| |||||||||||||||||| || | || || || | | Sbjct 1830742 TAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTG-AAAGGGTGCGGCCAT 1830684 Query 48573 CCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGT 48632 | |||| |||||| || | | || | ||| ||||| || || | || |||||||| Sbjct 1830683 CTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGT 1830624 Query 48633 CCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || ||||| || | | | ||||| || | || || || | ||| |||| Sbjct 1830623 CCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGG 1830564 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || |||||||| || || |||||||| Sbjct 1830563 TTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421213475375348