Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1173 93.3 5e-14 >seq1173 Length=128733 Score = 93.3 bits (102), Expect = 5e-14 Identities = 175/248 (71%), Gaps = 11/248 (4%) Strand=Plus/Plus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 ||||| || | || ||| |||| |||||| || | ||||||||||||||| | |||| Sbjct 62616 TGAGCTATCATATGTGTCAATATGGCATAACTGGCAATATTAAAAGGTACACCAAGTCCC 62675 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTA--TAGCATAAAATT 7015 ||||| || ||||||||| || |||| || | ||| | || || ||| ||| | Sbjct 62676 ATATCAGCACTTCTTTGATACAATAGACAGGAGAGTTTATCAT-TAGCTA-CATGAAACT 62733 Query 7016 GACACAATAC-ATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCA 7074 || ||| || ||| || || ||||| | | ||| | ||||||||| ||||| | | Sbjct 62734 GA-GCAAGACAATGGCAAGGTGGTAATGCCATTTTATCAAGATCAGATGGGTTCCAGGAA 62792 Query 7075 GTCATTAAAATACGTCTATCATTTGGATTTGTTTTT--AATTTTG--TTATAATTATTTG 7130 |||||| || | ||| || ||| ||||||| | ||| ||| ||||||| | | Sbjct 62793 CACATTAATATTCTTCTGTCTGCTGG-TTTGTTTCTGAAATATTGATTTATAATAACATA 62851 Query 7131 TAATTGAT 7138 |||||||| Sbjct 62852 TAATTGAT 62859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595817269156800