Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1278 122 5e-23 seq346 122 5e-23 seq1322 120 2e-22 seq733 120 2e-22 seq322 118 6e-22 seq271 118 6e-22 seq105 118 6e-22 seq6218 114 7e-21 seq34 114 7e-21 >seq1278 Length=94363 Score = 122 bits (134), Expect = 5e-23 Identities = 83/94 (88%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| |||||| | ||||||||||| |||||||||| ||||||||||||||||| Sbjct 26505 AAATAAACAAAAATTAGTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 26446 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||||||||| Sbjct 26445 GCACGACGCTCTAACCAACTGAGCTAATGGGCCG 26412 >seq346 Length=360785 Score = 122 bits (134), Expect = 5e-23 Identities = 90/103 (87%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||| ||| || || ||||||| ||| ||||||||| |||||||||| |||||||| Sbjct 127388 GAAAAATAAAAC-AAGAAAAAATGTAAT-GGCCCATGAGGGGATCGAACCCGCGACCTTC 127331 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 127330 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 127288 >seq1322 Length=8179 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||| ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 6667 AAAAAATGTAAT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 6609 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 6608 GCTCTAACCAACTGAGCTAATGGGCCG 6582 >seq733 Length=684921 Score = 120 bits (132), Expect = 2e-22 Identities = 80/90 (89%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 74186 AAAAAATGTCAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 74245 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||| ||||||||||||||||||||| || Sbjct 74246 GCTCTAACCAACTGAGCTAATGGGCCGACG 74275 >seq322 Length=654464 Score = 118 bits (130), Expect = 6e-22 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| | || |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 631327 AAAAAAACTTATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 631268 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||| |||||||||||||||||||||| Sbjct 631267 CGCTCTAACCAACTGAGCTAATGGGCCGT 631239 >seq271 Length=1385472 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 120010 AATAAAAAACATTAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 119951 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 119950 GACGCTCTAACCAACTGAGCTAATGGGCC 119922 >seq105 Length=628785 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8516 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8457 Query 11516 TGAGCTAATGGGCCGTCGACGATT 11539 |||||||||||||||| | |||| Sbjct 8456 TGAGCTAATGGGCCGTTGGTGATT 8433 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||||| | | |||||||||| |||||||||| |||||||||||||||||||| Sbjct 217287 AATAAAAAAGTATTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 217228 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 217227 CGACGCTCTAACCAACTGAGCTAATGGGCC 217198 Score = 114 bits (126), Expect = 7e-21 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 11434 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 11493 Query 11516 TGAGCTAATGGGCCGTCGACGA 11537 |||||||||||||| ||||| Sbjct 11494 TGAGCTAATGGGCCTGTGACGA 11515 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 225193 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 225134 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 225133 TGAGCTAATGGGCC 225120 >seq6218 Length=902 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 265 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 206 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 205 TGAGCTAATGGGCCG 191 >seq34 Length=952033 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 738493 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 738552 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 738553 TGAGCTAATGGGCCG 738567 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261467782482448