Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq53 125 6e-24 seq429 95.1 1e-14 seq578 82.4 7e-11 >seq53 Length=2198565 Score = 125 bits (138), Expect = 6e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||||| | || ||||| | || | || || |||||||| | | Sbjct 1830768 AAAATTTGCATTCCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATG 1830709 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || | ||| | ||| |||| ||| ||||| ||||||| | | |||| Sbjct 1830708 TTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGC 1830649 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| ||||||||||| ||||| | ||||| || || || | | ||||| Sbjct 1830648 TGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCT 1830589 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | |||||||||||||| ||||||||||| || ||||||||||| Sbjct 1830588 GAAGGTTCAACTTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 Score = 118 bits (130), Expect = 1e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| || | || ||||| | || | || ||||||||||| | Sbjct 1830997 AAAAATTTGCATTCCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAAT 1830938 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || | ||| | ||| |||| ||| ||||| ||||||| | | ||| Sbjct 1830937 GTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTG 1830878 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| ||||| ||||||||||| ||||| | |||||| || ||||| | | ||||| Sbjct 1830877 CTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTC 1830818 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || | ||||||||||| || || || ||||| || || || ||||| Sbjct 1830817 AGAGGCTTCCACTTCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | || | ||||| || ||||||||||| | ||| || || | Sbjct 1831212 CCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTC--TG 1831155 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| | ||| |||| || ||||| | ||||| | | |||||| || || | Sbjct 1831154 ACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTG 1831095 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||||||||| ||||| | ||||| || || || | | ||||| | | || | Sbjct 1831094 GAATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAA 1831035 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||||||||| || || ||||| ||||| || ||||| Sbjct 1831034 CCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCAT 1830986 >seq429 Length=186180 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATC 94854 |||||||||||| | ||||||||||| || | |||||| ||| || || ||| Sbjct 15698 CAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGACAGGGTACGCCCATC 15639 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 || || ||||| || | || || || | || || || || || || || || || || Sbjct 15638 TTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGGATTCCCTCCTTATC 15579 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | || || ||||| || ||| |||||| | | || || || | |||||||| Sbjct 15578 CTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACCTCTAGGGTGATGGT 15519 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || ||||||||||||||||||||| || Sbjct 15518 CTTACCCGTGAGGGTTTTCACAAAGATCTGCATGTTT 15482 >seq578 Length=1472074 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 ||| | | || || ||||||||||| || ||||||||||| | |||||| || || || Sbjct 656173 AGACTTACCTCTGTTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACAT 656114 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCA 94994 ||| || || | | | || || |||| || ||||| || || || |||||||| | Sbjct 656113 TTTCGATGGTATCCGAGGGTTCAACCTCAAGAGTAATGGTCTTCCCCGTGAGAGTTTTTA 656054 Query 94995 CAAAGATCTGCAT 95007 | ||||||||||| Sbjct 656053 CGAAGATCTGCAT 656041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448250024453280