Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6705 219 7e-53 >seq6705 Length=852356 Score = 219 bits (242), Expect = 7e-53 Identities = 178/216 (82%), Gaps = 25/216 (12%) Strand=Plus/Plus Query 10614 GTATACCAAACGGTATTCTTCGCACTACCAAATAGTGAATACCGCTCATTAAATGATGCG 10673 ||||||||| |||||||||||| |||||| |||| |||||||| | |||||||||||||| Sbjct 31708 GTATACCAAGCGGTATTCTTCGAACTACCGAATAATGAATACCACCCATTAAATGATGCG 31767 Query 10674 TG--------AAAGTATAAAATTTAACATTAATCTTGTCA--------ACATTTTAATCT 10717 || ||||||||||||| ||||||||| |||||| |||||||||||| Sbjct 31768 TGTAAGCGTGAAAGTATAAAATTCAACATTAATTTTGTCATTTTGTCAACATTTTAATCT 31827 Query 10718 TGTCTCGATGTATTCACATTGTGTTTATTAACGATAATTAGAAAACTCTAGATTTAGATC 10777 |||| ||||||| |||||||||||| ||| | |||||||||||||||| ||||| Sbjct 31828 TGTC--GATGTATACACATTGTGTTT--TAA-----AATAGAAAACTCTAGATTCAGATC 31878 Query 10778 CATAATCAAACGATGAGAACTATTTTATAAACGTAT 10813 |||||| |||||||||||||| |||||||||||||| Sbjct 31879 CATAATTAAACGATGAGAACTTTTTTATAAACGTAT 31914 Score = 178 bits (196), Expect = 2e-40 Identities = 150/184 (82%), Gaps = 24/184 (13%) Strand=Plus/Minus Query 1162 ATACGTTTATAAAATAGTTCTCATCGTTTGATTATGGATCTAAATCTAGAGTTTTCTAAT 1221 |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| | Sbjct 31914 ATACGTTTATAAAAAAGTTCTCATCGTTTAATTATGGATCTGAATCTAGAGTTTTCTATT 31855 Query 1222 TATCGTTAATAAACACAATGTGAATACATCGAGACAAGATTAAAATGTT-------TGAC 1274 ||| |||||||||||| ||||||| ||||||||||||||||| |||| Sbjct 31854 -----TTA--AAACACAATGTGTATACATC--GACAAGATTAAAATGTTGACAAAATGAC 31804 Query 1275 AAGATTAATGTTAAATTTTATACTTT--------CACGCATCATTTAATGAGCGGTATTC 1326 || ||||||||| ||||||||||||| |||||||||||||||| | ||||||| Sbjct 31803 AAAATTAATGTTGAATTTTATACTTTCACGCTTACACGCATCATTTAATGGGTGGTATTC 31744 Query 1327 ACTA 1330 | || Sbjct 31743 ATTA 31740 Score = 104 bits (114), Expect = 4e-18 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 10548 CTACAGGGCACGGCTTTTCATTCTCTGAAACTGAAATAGTGACGATTCACTATTTCGTAG 10607 ||||||||||| |||||||||| ||||||| | |||||||||| |||||||||||||||| Sbjct 31581 CTACAGGGCACAGCTTTTCATTATCTGAAATTAAAATAGTGACTATTCACTATTTCGTAG 31640 Query 10608 TGCAATGTATAC 10619 |||||| ||||| Sbjct 31641 TGCAATCTATAC 31652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068481672164