Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006642.1 Length=14286 Score E Sequences producing significant alignments: (Bits) Value seq633 179 3e-41 seq345 91.5 1e-14 seq551 78.8 8e-11 >seq633 Length=131030 Score = 179 bits (198), Expect = 3e-41 Identities = 152/187 (81%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 5543 ACAGTAATGGTCGCGATCTGGAAATTTATAGACTTAGAAAATATTTAGCTGTAGAGTCGA 5602 ||||| ||| | |||||||||||| || ||||||| ||||||| |||||||||||||| Sbjct 101475 ACAGTTATGATTGCGATCTGGAAAATTTTAGACTTTATAAATATTGAGCTGTAGAGTCGA 101416 Query 5603 TGACGTCACGACGAAATTAATGTCAAGGTCAGTCTGCATCATCAATGGCGTCATAAAAAG 5662 ||| | || ||||||||||||||||||| |||| || || || ||| |||||||| || Sbjct 101415 TGAGGCCATGACGAAATTAATGTCAAGGCCAGTTTGTGTCCTCTCTGGTGTCATAAACAG 101356 Query 5663 TACAATATCGAGGGCCCGCTGAGTATTGAACTCCAGTTCATGTGTATTCGTTACGTAGGT 5722 | |||||| || ||| ||| ||| || | |||||||||||| |||||| |||| |||| Sbjct 101355 TTCAATATAGACGGCATGCTAAGTGTTAAGATCCAGTTCATGTCTATTCGGTACGAAGGT 101296 Query 5723 AAGGTCG 5729 ||| ||| Sbjct 101295 AAGCTCG 101289 Score = 174 bits (192), Expect = 1e-39 Identities = 155/193 (80%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 5543 ACAGTAATGGTCGCGATCTGGAAATT----TA---TAGACTTAGAAAATATTTAGCTGTA 5595 ||||| ||| |||||||||||||||| || ||||||||| ||||||| ||||||| Sbjct 115075 ACAGTTATGATCGCGATCTGGAAATTATTATACATTAGACTTAGTAAATATTGAGCTGTA 115016 Query 5596 GAGTCGATGACGTCACGACGAAATTAATGTCAAGGTCAGTCTGCATCATCAATGGCGTCA 5655 |||||||||| |||| || |||||||||||||||| |||| | || || ||| |||| Sbjct 115015 GAGTCGATGAGGTCATGATGAAATTAATGTCAAGGCCAGTTTATGTCCTCTCTGGTGTCA 114956 Query 5656 TAAAAAGTACAATATCGAGGGCCCGCTGAGTATTGAACTCCAGTTCATGTGTATTCGTTA 5715 |||| ||| |||||| | ||| ||| ||| || | ||||||||||||| |||||| || Sbjct 114955 TAAACAGTTCAATATAGGCGGCATGCTAAGTGTTAAGCTCCAGTTCATGTCTATTCGGTA 114896 Query 5716 CGTAGGTAAGGTC 5728 || ||||||| || Sbjct 114895 CGAAGGTAAGCTC 114883 >seq345 Length=1222718 Score = 91.5 bits (100), Expect = 1e-14 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 8899 AAAAGTAATTCGGACAGCCCCGGCCGGGAATCGAACCTGGATCTTTTGGTTACGCACCAA 8958 |||| |||||||||| || | | |||||||||| | |||| ||||||||||| |||| Sbjct 131805 AAAAATAATTCGGACGGCTTAGACTGGGAATCGAATCCAGATCGTTTGGTTACGCGCCAA 131864 Query 8959 GAGCTCTTCCAGTTAAGCTATCTAAGAC 8986 | ||||| |||||||||||||| ||||| Sbjct 131865 GCGCTCTGCCAGTTAAGCTATCCAAGAC 131892 >seq551 Length=364722 Score = 78.8 bits (86), Expect = 8e-11 Identities = 59/68 (87%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 8924 GGGAATCGAACCTGGATCTTTTGGTTACGCACCAAGAGCTCTTCCAGTTAAGCTATCTAA 8983 |||||||||||| |||| ||||||||||| ||||| ||||| |||||||||||||| | Sbjct 221178 GGGAATCGAACCCAGATCGTTTGGTTACGCGCCAAGTGCTCTACCAGTTAAGCTATCCGA 221237 Query 8984 GACATCGT 8991 ||| |||| Sbjct 221238 GAC-TCGT 221244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 45592926038876