Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006644.1 Length=16103 Score E Sequences producing significant alignments: (Bits) Value seq6705 2832 0.0 seq551 78.8 1e-10 >seq6705 Length=852356 Score = 2832 bits (3140), Expect = 0.0 Identities = 2174/2575 (84%), Gaps = 105/2575 (4%) Strand=Plus/Plus Query 4494 TTAAAAGATTATACTTTTTAAATATCAAAGGaaaaaaaTTGATATCGTAAAAATTCTAGA 4553 ||||||||||||| || ||||||| ||||| || ||||| || |||| ||||| | ||| Sbjct 117497 TTAAAAGATTATATTTATTAAATAACAAAG-AATAAAATCGAAGTCGTGAAAATACGAGA 117555 Query 4554 CCACCAGGTTCTACTAATATTTCAATCAGCTAAGTAATTAAATGATCATGCCAGCAATAT 4613 ||||||||| |||| |||| || ||||||| || |||| ||| | | | |||||||| Sbjct 117556 CCACCAGGTGCTACAAATAATTTAATCAGCGAATCAATTCAATACTTCTTC-AGCAATAT 117614 Query 4614 TCCCTTACAGCCTAATTATTTTTCGACAATATTTTGATGTTTGCCTCTCATTTCTTGCAT 4673 | ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 117615 TTCCTTATAGCCTAATTATTTTTCGACAATATTTTGATGTTTGCCTCGCATTTCTTGCAT 117674 Query 4674 TTTGTTACGAATAGTGTTCAAAATCAGCTGCGAATCAAATTCAACCCATTTTTGCCCAGT 4733 |||||||||||| || ||| |||||||||||| |||||||||||||||||||| |||| Sbjct 117675 TTTGTTACGAATCGTATTCGAAATCAGCTGCGGATCAAATTCAACCCATTTTTTTTCAGT 117734 Query 4734 CGCATGTTTTTTAACATAGTTCAATAAAACAGTTCTTGCATGTTCATCTAGACCGGGCCT 4793 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 117735 GGCATGTTTTTTAACATAGTTCAATAAAACAGTTCTTGCATTTTCATCTAGACCGGGCCT 117794 Query 4794 TACACTTGTTCCCTCCAAGTCAAATGCATTGGCtttttttCCAGTTAGAGAACATATACT 4853 |||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 117795 TACACTCGTTCCATCCAAGTCAAATGCATTCGGTTTTTTTCCAGTTAGAGAACATATACT 117854 Query 4854 TAATGCGTTCTCGGTAAAAATTTCCAGTAACAACGATCGTGCAAGAGTTTTGCTGTCTTT 4913 |||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| Sbjct 117855 TAATGCGTTCTCGGTAAAAATTTCCAGTAATAACGTTCGTGCAAGGGTTTTGCTGTCTTT 117914 Query 4914 CGACATTATTTTAATATTACTTAGTTGAATGGCGTCTATGTACACCCGTGAATGTGGTAG 4973 |||| |||||||| |||| |||||||||||||| | || |||||| ||||||||||| || Sbjct 117915 CGACGTTATTTTACTATTGCTTAGTTGAATGGCATTTACGTACACTCGTGAATGTGGCAG 117974 Query 4974 AAGTTCAACGAGACCACTTTTCTTTTCCCGATGCTTTAGGGTCCATCTTGAGTCATTCGG 5033 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117975 GAGTTCAACGAGACCACTTTTCTTTTCCCGATGCTTTAGGGTCCATCTTGAGTCATTCGG 118034 Query 5034 ATCGTATTCTGGTGGAAAAATAAATTTGCGTGCTTGACCACGGATCTTATTCAGTGGATT 5093 |||||| |||||||| ||| |||| ||||| ||||| |||||||||||||| |||||||| Sbjct 118035 ATCGTACTCTGGTGGTAAAGTAAACTTGCGCGCTTGGCCACGGATCTTATTAAGTGGATT 118094 Query 5094 ATTATTTTTAACTTCTGTACCGTCACTGTTGTGTTTCTTCTCTTCGTTTTTTCGAGTATC 5153 |||||||||||||||||||||||||||| ||||||| |||| ||| |||| |||||| || Sbjct 118095 ATTATTTTTAACTTCTGTACCGTCACTGGTGTGTTTTTTCTGTTCCTTTTCTCGAGTGTC 118154 Query 5154 ATTTTGTAATTTTGATTCGGTTACTTTATCTGAATCGTTTTCATTTATATTTACTTCCAT 5213 ||||| | ||||||| ||||| |||||||||||| |||||||||||||||||||||||| Sbjct 118155 GTTTTGCACTTTTGATCCGGTTGCTTTATCTGAATTGTTTTCATTTATATTTACTTCCAT 118214 Query 5214 CATACTATTTTCTAATTCTTTGACTGTAGAATCTAGATCACTAATATTAGGACCATTACT 5273 |||||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||| Sbjct 118215 CATACTATTTTCTAATTCTTTGACTGCTGAATCTAGATCAAAAATATCAGGACAATTACT 118274 Query 5274 GACTTCATCCGTTAGGTCAATCAACCCTTTTATGATCTTACAATTTTCCATAAACGCAAG 5333 |||||| |||||| |||| ||| ||||||||||| |||||||| || |||||||| Sbjct 118275 AGCTTCATTCGTTAGCTCAAGTAACTCTTTTATGATCGTACAATTTCTTATTAACGCAAG 118334 Query 5334 CCGCATTTTCTCTAATACTAATTGGtttttttCATAATTACTATGAAGTTGTTCCAATTT 5393 ||||||||||||||| |||||||||||| |||||| | |||||||||| ||||||| Sbjct 118335 CCGCATTTTCTCTAACACTAATTGGTTTGCTTCATACTCCCTATGAAGTTTTTCCAATGA 118394 Query 5394 TTCTTTGAAGTTATCACCAAAGACTGACCGTAGAGCCGTTACAATTTGCCATTTTCTTAT 5453 ||||||||||||||||||||||| ||||||||| || ||| |||||| |||||||| Sbjct 118395 TTCTTTGAAGTTATCACCAAAGATTGACCGTAGCACCATTATAATTTGACATTTTCTCGA 118454 Query 5454 TAACTCTGAAGAATTTTTGACTGATAGTTCATTTTCTTGGTTGTTGTTAGCCGTATTGCT 5513 |||||||||||| |||| | ||| ||||||||||||| |||||||||| | ||| || Sbjct 118455 TAACTCTGAAGAGTTTTGAGCGGATGGTTCATTTTCTTGATTGTTGTTAGTCTTATCACT 118514 Query 5514 CTCTTCAACACAATGGCTAGTTTTCTGAAGATTCTCTTTTGTAGTTTGATCTGGCAAACT 5573 |||||||| ||||||||||||| || ||||||||||||||||||||||||| |||| ||| Sbjct 118515 CTCTTCAATACAATGGCTAGTTGTCGGAAGATTCTCTTTTGTAGTTTGATCCGGCACACT 118574 Query 5574 AACGGTATTATTGCCTGATAAAGATATTCTGAGTGACTGTCTTGTCAAATATCTTCTGGC 5633 |||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 118575 TACGGCATTATTGGCTGATAAAGATATTTTGAGTGACTGTCTTGTCAAATATCTTCTGGC 118634 Query 5634 TTTGGGGGAGGAATCGGCAGTTCCAACTTTACTTTCCGTTCGGCCTATTCTTACCTCGAC 5693 ||| ||||| ||||||| |||| |||||||||||| | ||| || ||| ||||||| Sbjct 118635 TTTTGGGGAAGAATCGGTAGTTGCAACTTTACTTTTCTTTCCGCTCATTGTTACCTC--- 118691 Query 5694 ATTAGTCAAGTCTAGTTGCTTTGGTATTTCTTCACTCACTGGCTCCGCATCACTGTTTAG 5753 || || ||||||||||| |||| |||||||||||| Sbjct 118692 ---AG--AA----------------------TCACTCACTGGTTCCGTATCACTGTTTAG 118724 Query 5754 AGTTAAAGTTGTACGGACTTTGTTTGATTCTGAGCTCGATTGTGATTCGAGTACTTTCTT 5813 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 118725 AGTTAAACTTGTACGGACTTTGTTTGTTTCTGAGCTCGATTGTGATTCGAGTACTTTCTT 118784 Query 5814 GTCCGATGTTGATGGTACATCTGGAATGTAATTTTTAACTATTAGCGACCTAATCAAAAA 5873 | |||||||||||||| ||||||||||| |||||| || || |||| |||||||| |||| Sbjct 118785 GACCGATGTTGATGGTGCATCTGGAATGCAATTTTAAATTAGTAGCAACCTAATC-AAAA 118843 Query 5874 GAAATACTTTTAAATGTCAACAGAACAATAGATACCTTTGACTATTTCCATGCTGCTCTG 5933 |||||||||||| |||||||||||||||||||| |||||| | ||||||||| Sbjct 118844 GAAATACTTTTA------AACAGAACAATAGATACCTTCGACTATATTTGAGCTGCTCTG 118897 Query 5934 CTCTTGATCAAATATTTTATTCAGTATCTTGATAAAGTTTCTTGCGTCTTTATATGAGTC 5993 ||||||||| ||||||||||||| |||||||||| |||| ||||||||||||| ||||| Sbjct 118898 CTCTTGATCGAATATTTTATTCAATATCTTGATATAGTTGTTTGCGTCTTTATAGGAGTC 118957 Query 5994 --TATAAAAAATAGTTTTAAGTATTCAGACCATATCGAATTACCCTCTGAGGCTTGTATT 6051 || |||||| ||| ||| ||| ||| | ||| ||| | ||| || | | || ||||| Sbjct 118958 TGTAAAAAAAACAGTGTTACGTACTCAAAACATGTCG-ACTACTCT-TTTGACTCGTATT 119015 Query 6052 ATTGACAGGGAAGT-ATCACCAGTTCAGATTTAGAATAGAGACTTAAAGTCAATCGCAGC 6110 || |||| |||||||||||| || |||||| ||||| |||||||| ||||| Sbjct 119016 AT-----AATAAGTCATCACCAGTTCAATATTTGAATAGCGACTTCAAGTCAATTGCAGC 119070 Query 6111 AAATAGTTTTTAGCAAACATAGTGGAAGTTGAACTGTTTACCAAATCGTATCAGATACTA 6170 || ||||||| ||||||||| || |||||||| || ||| ||||||||||| ||| Sbjct 119071 AATTAGTTTTAAGCAAACATTGTAGAAGTTGACCTATTTGCCAAATCGTAT------CTA 119124 Query 6171 TCTGCTCGCTACCCAAAAAAGAGGCCCTACAGTAAACAAATAAAACGATAATGTTTACAA 6230 | ||||||||||||||||||||||| |||| | |||| ||||| |||| ||| ||| || Sbjct 119125 ACGGCTCGCTACCCAAAAAAGAGGCCTTACAATGAACACATAAAGCGATGATGGTTATAA 119184 Query 6231 CTTACTCGTACTGTATTTTATATTAGCCAAAAATACTGTCCAGTTTTCTAAGAATTCTTG 6290 ||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||| Sbjct 119185 CTTACGTGTACTGTAGCAGATATTAGCCAAAAAAACTGTCCAGTTTTCTGAGAATTCTTG 119244 Query 6291 TTTTTCAACACGTTTCTTTATTTCTGATAGTTCTTCAACGGGAAATTTGACAAGAGCTGG 6350 ||| |||||||||||||||||||||||||||||||| || |||||||| |||| | || Sbjct 119245 TTTCTCAACACGTTTCTTTATTTCTGATAGTTCTTCGACTGGAAATTTAACAAAAACTAC 119304 Query 6351 ACCATCTGATGTTTCACGTAACCTTATCCAAGAATTCGGAATGCAAACATATTTTTCTGG 6410 |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| || Sbjct 119305 ACCATCTGATGTTTCACGACACCTTATCCAAGAATCCGGAACGCAAACATATTTTTCAGG 119364 Query 6411 ATCTATGTATGGAGGTTCCAATAATTCAATCACATGAAACTTAAACTCTTTCTGTTTGCT 6470 ||| ||||||||||| |||||||| ||||||||||||||||||| |||||| || || || Sbjct 119365 ATCCATGTATGGAGGATCCAATAACTCAATCACATGAAACTTAATCTCTTTATGCTTACT 119424 Query 6471 CATCTGAAAATAAATCGTTAAATTAATCAATAAAAATGCAAAGCATCTAAGATGGCGC-- 6528 |||||| ||||||||||||| ||||| | | |||||||||||||||||| || || || Sbjct 119425 CATCTGTAAATAAATCGTTAGATTAAGCGACAAAAATGCAAAGCATCTAGGACGGTGCAT 119484 Query 6529 ----------CC---------ATACACCCACAGACTCGCTTGTCGGACGGAAAAATTTGG 6569 || ||||| ||||| ||| || | | ||| ||| |||||| Sbjct 119485 ATGTTATGTGCCTGTAGATGTATACATGTACAGATTCGGTTATTGAACGAAAACATTTGG 119544 Query 6570 TATTCAATGACGTAGACTAAGTATGTTTAGAAACTGTTTACATTAATTTTTAAATTTGGA 6629 |||||||||||||| | ||||| ||||||||||||||||||| || ||||||||||| Sbjct 119545 TATTCAATGACGTACGCCAAGTACGTTTAGAAACTGTTTACATAAA---TTAAATTTGGA 119601 Query 6630 ACAAAATCTTTTTCGATTATTGAAAATCACAACGATTATTTATGGCTTTTATTTTACTTC 6689 |||||||||||||| |||||||||||||||| | |||||| ||| |||||||||||||| Sbjct 119602 ACAAAATCTTTTTCTATTATTGAAAATCACACCAATTATT--TGGTTTTTATTTTACTTC 119659 Query 6690 ATATCTTTTTGTAAAAAATTAATTCtttttttCAAATAGCCT-----------GTTGAAT 6738 |||||||| ||||||| | |||| ||||||||| ||||| Sbjct 119660 ATATCTTTCTGTAAAA---------TGATTTTTAAATAGCCTTTGAACTTGAAATTGAAC 119710 Query 6739 GTGGACTCAGCTTAA-TTCTCACAATAAAACCGGTTTTCCTCGAATTCAATTATACACAG 6797 | |||||| || || |||||||| ||||| |||||| ||| ||| |||||||||||| Sbjct 119711 GCGGACTCGGCGCAATTTCTCACAGGAAAACTGGTTTTGTTCGGATTAAATTATACACAG 119770 Query 6798 CACCAATTATTAAAATAGCTTACGTTTAGATGCCAACTTTGTGTCTGCTGTCCAAGCAAT 6857 ||| ||||| |||||||||||||||||||||||||| |||||| || || |||||||||| Sbjct 119771 CACGAATTAATAAAATAGCTTACGTTTAGATGCCAATTTTGTGACTACTATCCAAGCAAT 119830 Query 6858 TGAGCTGATTCCAATAATATGGCTTGGTAAAGTTTAGGAAATACTGTTTTCACTGTGACC 6917 |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| Sbjct 119831 TGAGCTGATTCCAATAATATGGCTTGATAATGTTTTGGAAATACTGTTTTCACTGTGACT 119890 Query 6918 TTAAACTCTCTTAATAAAATCGATAGAGAAAGAAATATTTTTGTAACGTTTACGTTGCGA 6977 || |||||| ||| |||||| ||||| |||| ||||| |||||| ||||||||| | || Sbjct 119891 TTGAACTCTGTTATTAAAATTGATAGCGAAA-AAATA--TTTGTACCGTTTACGTCGTGA 119947 Query 6978 GACGTCTGTTATCGCGCACGACAAGGACGCTTACTGAGGAGAATTGGAACTGTAG 7032 ||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||| Sbjct 119948 GACGTCTGTTATCACGCACGACAAGGACGCTCACTGAATGGAATTAGAACTGTAG 120002 Score = 172 bits (190), Expect = 6e-39 Identities = 290/427 (68%), Gaps = 81/427 (19%) Strand=Plus/Plus Query 15471 GTAATTGTTGTAATGGTTTCAGATTGGGGTATTCAA------------------TATATT 15512 ||| |||||| |||||||| ||||||| ||||||| |||| Sbjct 115410 GTAGTTGTTGGAATGGTTTGAGATTGGATTATTCAACATAAAAATATAACTAAATATAAC 115469 Query 15513 GTTATAAATAAAACATTGTTCAtttttttAATTCATTATTTAAAAAGCTATAACTTCAAA 15572 |||||||||| || | |||||||||||| | ||||||||||| ||||| || || | | | Sbjct 115470 GTTATAAATACAA-ACTGTTCATTTTTTGA-TTCATTATTTACAAAGCAATTACAT-ATA 115526 Query 15573 AAATTCATTAACAACTAATTAACTCTTTACACATGTCTTATACATAATTGAAAACTTATT 15632 |||||||||||||| | |||| | | | | ||||| ||| | | ||||||| Sbjct 115527 AAATTCATTAACAA-TGTCTAACACATAATTGAAAACTTATT-ATACT--ATTACTTATT 115582 Query 15633 ATAATTCATTGCATAAGAAACTATGACAGTCATTAATATTCTATTTACGTAGAGCTA--- 15689 ||||||||||||| |||||| |||| || |||||||||||| |||||| ||||| Sbjct 115583 ATAATTCATTGCACAAGAAATTATGGCA----TTAATATTCTATGTACGTATAGCTAGAG 115638 Query 15690 -------------------------------------AAAACATATATATAAATACCATG 15712 |||| ||||| ||||||| ||| Sbjct 115639 CAAATAATGAGCTGTTTACATAATATACGTATAGCTGAAAAAGTATATTTAAATACTATG 115698 Query 15713 GCAGTTTATTTTGCATTCTTTGGCAAG--ATACATTCTTATAAGATATATCTTATTATAT 15770 ||| |||||| |||||| |||| |||| |||||||||||| | ||||| || Sbjct 115699 GCACTTTATTCTGCATTGTTTGACAAGTTATACATTCTTATCA---------TATTA-AT 115748 Query 15771 TGAGTTCAGACTTATCTTCTCTCTGTTATGCACTTAAAAACTATTCTTATATATTAATAG 15830 ||||||||| ||||| || |||| | |||||| ||||||| |||| ||||| ||| |||| Sbjct 115749 TGAGTTCAGTCTTATATTTTCTCCGGTATGCAATTAAAAATTATTTTTATACATTGATAG 115808 Query 15831 TACTCTC 15837 ||| ||| Sbjct 115809 TACACTC 115815 Score = 161 bits (178), Expect = 1e-35 Identities = 139/167 (83%), Gaps = 5/167 (3%) Strand=Plus/Plus Query 2892 CCAAAAAGATATCTTCTGTCAATTATTGGCTGATCCTGAAAAATAATAAAAAATGTACCC 2951 |||||| ||||| |||| | ||||||| ||| || ||||||| ||||||||| |||| | Sbjct 116361 CCAAAAGGATATATTCTATTAATTATTAGCTAATACTGAAAA-TAATAAAAA-TGTAACT 116418 Query 2952 TTTAGTTATATATAAA--AGTACTAATTGTTATTCATCCGTTTCTCTGGGCATTAATGAA 3009 || ||| | ||||||| |||| | ||| |||| ||| ||||||||||| ||||||||| Sbjct 116419 TTAAGTAAAATATAAATAAGTAAGA-TTGATATTTATCTGTTTCTCTGGGTATTAATGAA 116477 Query 3010 AGTCTGGTAGAGATTGACTTTTTATGATCAAAATTATTTGTATGCCT 3056 ||||| | || ||||||||| ||||||||||||||||||||||||| Sbjct 116478 AGTCTTATGGAAATTGACTTTGTATGATCAAAATTATTTGTATGCCT 116524 >seq551 Length=364722 Score = 78.8 bits (86), Expect = 1e-10 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 10640 GGGAATCGAACCCAGATCTTTTGGTTACGCGCCAAGAGCTTTCCCACTTAAGCTAT 10695 |||||||||||||||||| ||||||||||||||||| ||| | ||| ||||||||| Sbjct 221178 GGGAATCGAACCCAGATCGTTTGGTTACGCGCCAAGTGCTCTACCAGTTAAGCTAT 221233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51406832040184