Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006648.1 Length=15158 Score E Sequences producing significant alignments: (Bits) Value seq633 203 3e-48 >seq633 Length=131030 Score = 203 bits (224), Expect = 3e-48 Identities = 157/187 (84%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 12416 CGATCTTACCTACGTAACGAACACACATGAACTGGAGTTCAATACTCAGCGTGCCCTCTA 12475 ||| ||||||| |||| |||| | |||||||||||| | || ||| ||| |||| |||| Sbjct 101289 CGAGCTTACCTTCGTACCGAATAGACATGAACTGGATCTTAACACTTAGCATGCCGTCTA 101348 Query 12476 TATTGAACTGTTTATGACTCCATAGAGGACGCAAACTGACCTTGACATTGATTTCGTCGT 12535 |||||||||||||||||| ||| ||||||| ||||||| |||||||||| |||||||| | Sbjct 101349 TATTGAACTGTTTATGACACCAGAGAGGACACAAACTGGCCTTGACATTAATTTCGTCAT 101408 Query 12536 GACGTCATCGACTCTGCAGCTGAATATTTTCTAAGTCTATAAATTTCCAGATCGCGACCA 12595 | | ||||||||||| ||||| ||||||| ||||||| || |||||||||||| | || Sbjct 101409 GGCCTCATCGACTCTACAGCTCAATATTTATAAAGTCTAAAATTTTCCAGATCGCAATCA 101468 Query 12596 TTACTGT 12602 | ||||| Sbjct 101469 TAACTGT 101475 Score = 197 bits (218), Expect = 1e-46 Identities = 160/193 (83%), Gaps = 7/193 (4%) Strand=Plus/Plus Query 12417 GATCTTACCTACGTAACGAACACACATGAACTGGAGTTCAATACTCAGCGTGCCCTCTAT 12476 || ||||||| |||| |||| | ||||||||||||| | || ||| ||| |||| |||| Sbjct 114883 GAGCTTACCTTCGTACCGAATAGACATGAACTGGAGCTTAACACTTAGCATGCCGCCTAT 114942 Query 12477 ATTGAACTGTTTATGACTCCATAGAGGACGCAAACTGACCTTGACATTGATTTCGTCGTG 12536 ||||||||||||||||| ||| ||||||| |||||| |||||||||| ||||| || || Sbjct 114943 ATTGAACTGTTTATGACACCAGAGAGGACATAAACTGGCCTTGACATTAATTTCATCATG 115002 Query 12537 ACGTCATCGACTCTGCAGCTGAATATTTTCTAAGTCTA---TA----AATTTCCAGATCG 12589 || ||||||||||| ||||| ||||||| ||||||||| || ||||||||||||| Sbjct 115003 ACCTCATCGACTCTACAGCTCAATATTTACTAAGTCTAATGTATAATAATTTCCAGATCG 115062 Query 12590 CGACCATTACTGT 12602 ||| ||| ||||| Sbjct 115063 CGATCATAACTGT 115075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48383088963004