Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006649.1 Length=32108 Score E Sequences producing significant alignments: (Bits) Value seq6705 223 7e-54 >seq6705 Length=852356 Score = 223 bits (246), Expect = 7e-54 Identities = 179/216 (83%), Gaps = 25/216 (12%) Strand=Plus/Plus Query 13822 GTATACCAAACGGTATTCTTCGCACTACCAAATAGTGAATACCGCTCATTAAATGATGCG 13881 ||||||||| |||||||||||| |||||| |||| |||||||| | |||||||||||||| Sbjct 31708 GTATACCAAGCGGTATTCTTCGAACTACCGAATAATGAATACCACCCATTAAATGATGCG 31767 Query 13882 TG--------AAAGTATAAAATTTAACATTAATCTTGTCA--------ACATTTTAATCT 13925 || ||||||||||||| ||||||||| |||||| |||||||||||| Sbjct 31768 TGTAAGCGTGAAAGTATAAAATTCAACATTAATTTTGTCATTTTGTCAACATTTTAATCT 31827 Query 13926 TGTCTCGATGTATTCACATTGTGTTTATTAACGATAATTAGAAAACTCTAGATTTAGATC 13985 |||| ||||||| |||||||||||| ||| | |||||||||||||||| ||||| Sbjct 31828 TGTC--GATGTATACACATTGTGTTT--TAA-----AATAGAAAACTCTAGATTCAGATC 31878 Query 13986 CATAATCAAACGATGAGAACTTTTTTATAAACGTAT 14021 |||||| ||||||||||||||||||||||||||||| Sbjct 31879 CATAATTAAACGATGAGAACTTTTTTATAAACGTAT 31914 Score = 104 bits (114), Expect = 5e-18 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 13756 CTACAGGGCACGGCTTTTCATTCTCTGAAACTGAAATAGTGACCATTCACTATTTCGTAG 13815 ||||||||||| |||||||||| ||||||| | |||||||||| |||||||||||||||| Sbjct 31581 CTACAGGGCACAGCTTTTCATTATCTGAAATTAAAATAGTGACTATTCACTATTTCGTAG 31640 Query 13816 TGCAATGTATAC 13827 |||||| ||||| Sbjct 31641 TGCAATCTATAC 31652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102615045286320