Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006650.1 Length=18768 Score E Sequences producing significant alignments: (Bits) Value seq183 181 1e-41 seq295 123 3e-24 seq212 118 1e-22 seq84 95.1 1e-15 seq551 89.7 6e-14 seq345 86.0 8e-13 seq211 86.0 8e-13 >seq183 Length=738700 Score = 181 bits (200), Expect = 1e-41 Identities = 296/413 (72%), Gaps = 19/413 (5%) Strand=Plus/Plus Query 11226 AAAAATTTGTTAAATAACAATTAAATAACTTAAACAAAAATCAAGCTAAA---ttttttt 11282 |||||||||||| |||||||| |||||||| |||||| | | || ||||||| Sbjct 110010 AAAAATTTGTTAGTTAACAATTGAATAACTTTTTGAAAAATGGTGATTAAACTTTTTTTT 110069 Query 11283 ttGCGGGGCTATATTCCTTTAAGTGTCTAGATAACACTATAATTTATTTAGATATTTAAA 11342 | | | ||| | | || |||||| ||| | |||| ||||| || | || |||||| Sbjct 110070 CTTCAGAGCTCAAATATTTCAAGTGTTAAGAAGATACTAGAATTTTTTCAAATTTTTAAA 110129 Query 11343 TTAATATTGAATGTTATCAAAATATTATTTTGTGTTGCATACTTTACTT----GGCGGCG 11398 | | ||| || |||| || | || ||||| | |||| | | ||| ||||||| Sbjct 110130 ATCACATTTTATTTTATAAATAAATCATTTT-TATTGCTGAACTCGCTTTAGCGGCGGCG 110188 Query 11399 ACGCCTAGGCCCCGAAACGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATA 11458 ||| | | || ||| ||| |||||||||| | ||||||||| | ||| ||||| | Sbjct 110189 -CGCGCATG--CCATAACTGCCGCGCGGAGCCCTATTTTCAACGTCTACTTAAAATTA-A 110244 Query 11459 AATAATGGAGCTACAACTCCGGGAATCGAGACTTAttttacta-aaattttctactcttt 11517 ||||||||| ||||| ||||||| | ||| ||||||| || |||||| || |||||| Sbjct 110245 AATAATGGATATACAAATCCGGGAGTTCGGAC-TATTTTATTAGAAATTTCCTCCTCTTT 110303 Query 11518 taggatcttttttcaaatttcagataacttcaatatttttGAAGTTATAACTACAAAACG 11577 | || ||| |||| |||| | | || | ||||||||| |||||| | | |||||| Sbjct 110304 AACGAGCTTCTTTC-AATTGCTTA-AATGTTAATATTTTTCGAGTTATTAACAAAAAACG 110361 Query 11578 AAGACTCTCtttttttCTCTTCGTTTTTTGTTTATAACAAATAAAATTTTTAA 11630 | | | || |||||| || || | ||||||| ||||||| | ||||||||| Sbjct 110362 A--AATATCATTTTTT-TCATCTTATTTTGTTAATAACAATTGCAATTTTTAA 110411 Score = 176 bits (194), Expect = 5e-40 Identities = 295/413 (71%), Gaps = 19/413 (5%) Strand=Plus/Plus Query 17754 AAAAATTTGTTAAATAACAATTAAATAACTTAAACAAAAATCAAGCTAAA---ttttttt 17810 |||||||||||| |||||||| |||||||| |||||| | | || ||||||| Sbjct 110010 AAAAATTTGTTAGTTAACAATTGAATAACTTTTTGAAAAATGGTGATTAAACTTTTTTTT 110069 Query 17811 ttGCGGGGCTATATTCCTTTAAGTGTCTAGATAACACTATAATTTATTTAGATATTTAAA 17870 | | | ||| | | || |||||| ||| | |||| ||||| || | || |||||| Sbjct 110070 CTTCAGAGCTCAAATATTTCAAGTGTTAAGAAGATACTAGAATTTTTTCAAATTTTTAAA 110129 Query 17871 TTAATATTGAATGTTATCAAAATATTATTTTGTGTTGCATACTTTACTT----GGCGGCG 17926 | | ||| || |||| || | || ||||| | |||| | | ||| ||||||| Sbjct 110130 ATCACATTTTATTTTATAAATAAATCATTTT-TATTGCTGAACTCGCTTTAGCGGCGGCG 110188 Query 17927 ACGCCTAGGCCCCGAAACGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATA 17986 ||| | | || ||| ||| |||||||||| | ||||||||| | ||| ||||| | Sbjct 110189 -CGCGCATG--CCATAACTGCCGCGCGGAGCCCTATTTTCAACGTCTACTTAAAATTA-A 110244 Query 17987 AATAATGGAGCTACAACTCCGGGAATCGAGACTTattttacta-aaattttctacttttt 18045 ||||||||| ||||| ||||||| | ||| ||||||| || |||||| || || ||| Sbjct 110245 AATAATGGATATACAAATCCGGGAGTTCGGAC-TATTTTATTAGAAATTTCCTCCTCTTT 110303 Query 18046 taggatcttttttcaaatttcagataacttcaatatttttGAAGTTATAACTACAAAACG 18105 | || ||| |||| |||| | | || | ||||||||| |||||| | | |||||| Sbjct 110304 AACGAGCTTCTTTC-AATTGCTTA-AATGTTAATATTTTTCGAGTTATTAACAAAAAACG 110361 Query 18106 AAGACTCTCtttttttCTCTTCGTTTTTTGTTTATAACAAATAAAATTTTTAA 18158 | | | || |||||| || || | ||||||| ||||||| | ||||||||| Sbjct 110362 A--AATATCATTTTTT-TCATCTTATTTTGTTAATAACAATTGCAATTTTTAA 110411 >seq295 Length=216907 Score = 123 bits (136), Expect = 3e-24 Identities = 284/413 (69%), Gaps = 31/413 (8%) Strand=Plus/Plus Query 11323 AATTTATTTAGATATTTAAATTAATATTGAATGTTATCAAAATATTATTTTGTGTTGCAT 11382 ||||| |||| || |||||| | | ||| ||||||| || | || ||||| | |||| Sbjct 44757 AATTTTTTTAAATTTTTAAAATCACATTTTATGTTATAAATAAATAATTTT-TATTGCTG 44815 Query 11383 A-CTTTACTTGGCGGCGACGCCTAGGCCC----CGAAACGGCCACGCGGAGCCCAAGTTT 11437 | || | || |||||| ||| || | | ||| ||| |||| ||||| | ||| Sbjct 44816 AACTCTCTTTAGCGGCGGCGC----GCGCATGTCATAACTGCCGCGCGAAGCCCGATTTT 44871 Query 11438 CAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTAtttt 11497 |||||| ||||| |||||||||||||||| ||||| ||||| | | ||| |||||| Sbjct 44872 CAACGTCTAATTAAAATTATAAATAATGGATATACAATTCCGGTAGTTCGGAC-TATTTT 44930 Query 11498 acta-aaattttctactcttttaggatcttttttcaaatttcagataacttcaatatttt 11556 | || |||||| || |||||| | || ||||| | ||| | |||||||| Sbjct 44931 ATTAGAAATTTCCTCCTCTTTAACGA---------AAATTGC-CTTAATGTTAATATTTT 44980 Query 11557 tGAAGTTATAACTACAAAACGAAGACTCTCtttttttCTCTTCGTTTTTTGTTTATAACA 11616 | ||||||| | | ||||||| | | || |||| || | | |||||| |||||| Sbjct 44981 TCAAGTTATTAACAAAAAACGA--AATATCATTTTCATTCATTTTATTTTGTCAATAACA 45038 Query 11617 AATAAAATTTTTAA--TG-ACGGATA-AATTGAAAAATACACTTTCTCAGAATTAAATTC 11672 | | ||||||| | || || | | || ||||||| ||| ||| | |||| Sbjct 45039 ATTGCAATTTTTTACCTGCACCAAAATCCTTCAAAAATATTTTTTTCTAGAGGT-GATTC 45097 Query 11673 TGAATCCAACGCACCAATCGC-CATATTTTTAAGAGCATTGTAACGATTTTTC 11724 ||||| || | | | ||||| |||||||||| || | || | | ||||||| Sbjct 45098 CGAATCGAAAG-AGCCATCGCTCATATTTTTAGGACCTTTATCTCTATTTTTC 45149 Score = 120 bits (132), Expect = 4e-23 Identities = 283/413 (69%), Gaps = 31/413 (8%) Strand=Plus/Plus Query 17851 AATTTATTTAGATATTTAAATTAATATTGAATGTTATCAAAATATTATTTTGTGTTGCAT 17910 ||||| |||| || |||||| | | ||| ||||||| || | || ||||| | |||| Sbjct 44757 AATTTTTTTAAATTTTTAAAATCACATTTTATGTTATAAATAAATAATTTT-TATTGCTG 44815 Query 17911 A-CTTTACTTGGCGGCGACGCCTAGGCCC----CGAAACGGCCACGCGGAGCCCAAGTTT 17965 | || | || |||||| ||| || | | ||| ||| |||| ||||| | ||| Sbjct 44816 AACTCTCTTTAGCGGCGGCGC----GCGCATGTCATAACTGCCGCGCGAAGCCCGATTTT 44871 Query 17966 CAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTatttt 18025 |||||| ||||| |||||||||||||||| ||||| ||||| | | ||| |||||| Sbjct 44872 CAACGTCTAATTAAAATTATAAATAATGGATATACAATTCCGGTAGTTCGGAC-TATTTT 44930 Query 18026 acta-aaattttctacttttttaggatcttttttcaaatttcagataacttcaatatttt 18084 | || |||||| || || ||| | || ||||| | ||| | |||||||| Sbjct 44931 ATTAGAAATTTCCTCCTCTTTAACGA---------AAATTGC-CTTAATGTTAATATTTT 44980 Query 18085 tGAAGTTATAACTACAAAACGAAGACTCTCtttttttCTCTTCGTTTTTTGTTTATAACA 18144 | ||||||| | | ||||||| | | || |||| || | | |||||| |||||| Sbjct 44981 TCAAGTTATTAACAAAAAACGA--AATATCATTTTCATTCATTTTATTTTGTCAATAACA 45038 Query 18145 AATAAAATTTTTAA--TG-ACGGATA-AATTGAAAAATACACTTTCTCAGAATTAAATTC 18200 | | ||||||| | || || | | || ||||||| ||| ||| | |||| Sbjct 45039 ATTGCAATTTTTTACCTGCACCAAAATCCTTCAAAAATATTTTTTTCTAGAGGT-GATTC 45097 Query 18201 TGAATCCAACGCACCAATCGC-CATATTTTTAAGAGCATTGTAACGATTTTTC 18252 ||||| || | | | ||||| |||||||||| || | || | | ||||||| Sbjct 45098 CGAATCGAAAG-AGCCATCGCTCATATTTTTAGGACCTTTATCTCTATTTTTC 45149 >seq212 Length=420705 Score = 118 bits (130), Expect = 1e-22 Identities = 189/264 (72%), Gaps = 13/264 (5%) Strand=Plus/Plus Query 11225 GAAAAATTTGTTAAA---TAACAATTAAATAACTTAAACAAAAATCAAGCTAAA----tt 11277 ||||||||| |||| |||||||| |||||||| |||||| | | || || Sbjct 286463 GAAAAATTTCTTAACAATTAACAATTGAATAACTTTTGGAAAAATGGTGATTAAACTTTT 286522 Query 11278 tttttttGCGGGGCTATATTCCTTTAAGTGTCTAGATAACACTATAATTTATTTAGATAT 11337 | ||| | | ||||| |||| || |||||| ||| | |||||| ||| || | || | Sbjct 286523 TATTTCTTCAGGGCTCGATTCTTTCAAGTGTTAAGAAGATACTATATTTT-TTCAAATTT 286581 Query 11338 TTAAATTAATATTGAATGTTATCAAAATATTATTTTGTGTTGCATA-CTTTACTTGGCGG 11396 |||||| | ||| ||||||| ||||||||||||| | |||| | || | || || | Sbjct 286582 TTAAATCAC-ATTTTATGTTATAAAAATATTATTTT-TATTGCTGATCTCTCTTTAGCAG 286639 Query 11397 CGACGCCTAGGCCCCGAAACGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTA 11456 | ||| | ||| ||| ||| ||||||| || | |||||| || ||||| |||| Sbjct 286640 CAGCGCGCATGCCAT--AACCGCCGCGCGGAGGCCTATTTTCAATGTCTAATTAATATTA 286697 Query 11457 TAAATAATGGAGCTACAACTCCGG 11480 |||||||||||| || || ||||| Sbjct 286698 TAAATAATGGAGATAGAATTCCGG 286721 Score = 118 bits (130), Expect = 1e-22 Identities = 189/264 (72%), Gaps = 13/264 (5%) Strand=Plus/Plus Query 17753 GAAAAATTTGTTAAA---TAACAATTAAATAACTTAAACAAAAATCAAGCTAAA----tt 17805 ||||||||| |||| |||||||| |||||||| |||||| | | || || Sbjct 286463 GAAAAATTTCTTAACAATTAACAATTGAATAACTTTTGGAAAAATGGTGATTAAACTTTT 286522 Query 17806 tttttttGCGGGGCTATATTCCTTTAAGTGTCTAGATAACACTATAATTTATTTAGATAT 17865 | ||| | | ||||| |||| || |||||| ||| | |||||| ||| || | || | Sbjct 286523 TATTTCTTCAGGGCTCGATTCTTTCAAGTGTTAAGAAGATACTATATTTT-TTCAAATTT 286581 Query 17866 TTAAATTAATATTGAATGTTATCAAAATATTATTTTGTGTTGCATA-CTTTACTTGGCGG 17924 |||||| | ||| ||||||| ||||||||||||| | |||| | || | || || | Sbjct 286582 TTAAATCAC-ATTTTATGTTATAAAAATATTATTTT-TATTGCTGATCTCTCTTTAGCAG 286639 Query 17925 CGACGCCTAGGCCCCGAAACGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTA 17984 | ||| | ||| ||| ||| ||||||| || | |||||| || ||||| |||| Sbjct 286640 CAGCGCGCATGCCAT--AACCGCCGCGCGGAGGCCTATTTTCAATGTCTAATTAATATTA 286697 Query 17985 TAAATAATGGAGCTACAACTCCGG 18008 |||||||||||| || || ||||| Sbjct 286698 TAAATAATGGAGATAGAATTCCGG 286721 >seq84 Length=889906 Score = 95.1 bits (104), Expect = 1e-15 Identities = 199/286 (70%), Gaps = 17/286 (6%) Strand=Plus/Minus Query 11446 AATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTAttttact-aaaa 11504 ||||| ||||||||||||||||| || || || |||| ||||| ||||| | ||| Sbjct 866411 AATTAAAATTATAAATAATGGAGATAGAATTCTGGGAGCTAGGACTT-TTTTATTGGAAA 866353 Query 11505 ttttctactcttttaggatcttttttcaaatttcagataacttcaatatttttGAAGTTA 11564 ||| || |||||| | || | |||||| || || | ||||||||| ||||| Sbjct 866352 TTTCCTCCTCTTTAACGAGC----TTCAAAATTGCTTAAATGTTAATATTTTTCGAGTTA 866297 Query 11565 TAACTACAAAACGAAGACTCTCtttttttCTCTTCGTTTTTTGTTTATAACAAATAAAAT 11624 | | | |||||||| || ||||||| || | | ||||||| ||||||| | || | Sbjct 866296 TTAACATAAAACGAAATATC-ATTTTTTTTTCATTTTATTTTGTTAATAACAATTTAATT 866238 Query 11625 TTTTAATGACGGATAAA-----TTGAAAAATACACTTTCTCAGAATTAAATTCTGAATCC 11679 |||| | | || || || ||||| ||| ||| ||| | |||||||||| Sbjct 866237 TTTTTA-CCTGCATCAAAGTCCTTCAAAAA-ACATTTTTCTAGAGGT-GATTCTGAATCG 866181 Query 11680 AACGCACCAATCGC-CATATTTTTAAGAGCATTGTAACGATTTTTC 11724 || | | | ||||| |||||||||| || | || | | ||||||| Sbjct 866180 AATG-AGCCATCGCTCATATTTTTAGGACCTTTATCTCTATTTTTC 866136 Score = 89.7 bits (98), Expect = 6e-14 Identities = 198/286 (69%), Gaps = 17/286 (6%) Strand=Plus/Minus Query 17974 AATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTattttact-aaaa 18032 ||||| ||||||||||||||||| || || || |||| ||||| ||||| | ||| Sbjct 866411 AATTAAAATTATAAATAATGGAGATAGAATTCTGGGAGCTAGGACTT-TTTTATTGGAAA 866353 Query 18033 ttttctacttttttaggatcttttttcaaatttcagataacttcaatatttttGAAGTTA 18092 ||| || || ||| | || | |||||| || || | ||||||||| ||||| Sbjct 866352 TTTCCTCCTCTTTAACGAGC----TTCAAAATTGCTTAAATGTTAATATTTTTCGAGTTA 866297 Query 18093 TAACTACAAAACGAAGACTCTCtttttttCTCTTCGTTTTTTGTTTATAACAAATAAAAT 18152 | | | |||||||| || ||||||| || | | ||||||| ||||||| | || | Sbjct 866296 TTAACATAAAACGAAATATC-ATTTTTTTTTCATTTTATTTTGTTAATAACAATTTAATT 866238 Query 18153 TTTTAATGACGGATAAA-----TTGAAAAATACACTTTCTCAGAATTAAATTCTGAATCC 18207 |||| | | || || || ||||| ||| ||| ||| | |||||||||| Sbjct 866237 TTTTTA-CCTGCATCAAAGTCCTTCAAAAA-ACATTTTTCTAGAGGT-GATTCTGAATCG 866181 Query 18208 AACGCACCAATCGC-CATATTTTTAAGAGCATTGTAACGATTTTTC 18252 || | | | ||||| |||||||||| || | || | | ||||||| Sbjct 866180 AATG-AGCCATCGCTCATATTTTTAGGACCTTTATCTCTATTTTTC 866136 >seq551 Length=364722 Score = 89.7 bits (98), Expect = 6e-14 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 5365 TCTCGGATAGCTTAACTGGTAGAGCCTTTGGCGCGTAACCAAATGGTCCGGGTTCGAGTC 5424 ||||||||||||||||||||||||| |||||||||||||||| | || |||||||| || Sbjct 221239 TCTCGGATAGCTTAACTGGTAGAGCACTTGGCGCGTAACCAAACGATCTGGGTTCGATTC 221180 Query 5425 CCGGTCT 5431 || |||| Sbjct 221179 CCAGTCT 221173 >seq345 Length=1222718 Score = 86.0 bits (94), Expect = 8e-13 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 5365 TCTCGGATAGCTTAACTGGTAGAGCCTTTGGCGCGTAACCAAATGGTCCGGGTTCGAGTC 5424 ||| ||||||||||||||| ||||| |||||||||||||||| | || || ||||| || Sbjct 131891 TCTTGGATAGCTTAACTGGCAGAGCGCTTGGCGCGTAACCAAACGATCTGGATTCGATTC 131832 Query 5425 CCGGTCTGGATTGTCTGAATTATTTTT 5451 || |||| ||| ||||||||||| Sbjct 131831 CCAGTCTAAGCCGTCCGAATTATTTTT 131805 >seq211 Length=248701 Score = 86.0 bits (94), Expect = 8e-13 Identities = 133/186 (72%), Gaps = 18/186 (10%) Strand=Plus/Minus Query 11446 AATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTAttttact-aaaa 11504 ||||| ||||||||||||||||| || || | | |||| | || ||||| | ||| Sbjct 6304 AATTAAAATTATAAATAATGGAGATAGAATTTCCGGAA-----ATTTTTTTTATTGGAAA 6250 Query 11505 ttttctactcttttaggatcttttttcaaatttcagataacttcaatatttttGAAGTTA 11564 ||| || ||||| |||||| ||||| | | || | ||||||||| ||||| Sbjct 6249 TTTCCTCCTCTT--------TTTTTTTAAATTGCTTA-AATGTTAATATTTTTCGAGTTA 6199 Query 11565 TAACTACAAAACGAAGACTCTCtttttttCTCTTCGTTTTTTGTTTATAACAAATAAAAT 11624 | | | ||||||| | | | |||||| |||| ||||||||| ||||||| | ||| Sbjct 6198 TTAACAAAAAACGA--AATACCATTTTTTTTCTT-TTTTTTTGTTAATAACAATTGCAAT 6142 Query 11625 TTTTAA 11630 |||||| Sbjct 6141 TTTTAA 6136 Score = 82.4 bits (90), Expect = 9e-12 Identities = 132/186 (71%), Gaps = 18/186 (10%) Strand=Plus/Minus Query 17974 AATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTattttact-aaaa 18032 ||||| ||||||||||||||||| || || | | |||| | || ||||| | ||| Sbjct 6304 AATTAAAATTATAAATAATGGAGATAGAATTTCCGGAA-----ATTTTTTTTATTGGAAA 6250 Query 18033 ttttctacttttttaggatcttttttcaaatttcagataacttcaatatttttGAAGTTA 18092 ||| || || || |||||| ||||| | | || | ||||||||| ||||| Sbjct 6249 TTTCCTCCTCTT--------TTTTTTTAAATTGCTTA-AATGTTAATATTTTTCGAGTTA 6199 Query 18093 TAACTACAAAACGAAGACTCTCtttttttCTCTTCGTTTTTTGTTTATAACAAATAAAAT 18152 | | | ||||||| | | | |||||| |||| ||||||||| ||||||| | ||| Sbjct 6198 TTAACAAAAAACGA--AATACCATTTTTTTTCTT-TTTTTTTGTTAATAACAATTGCAAT 6142 Query 18153 TTTTAA 18158 |||||| Sbjct 6141 TTTTAA 6136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59934107490644