Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006653.1 Length=26062 Score E Sequences producing significant alignments: (Bits) Value seq129 223 6e-54 seq6705 210 4e-50 >seq129 Length=3256488 Score = 223 bits (246), Expect = 6e-54 Identities = 157/175 (90%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 6468 CAATGCCTGGTTAGACTGTAATCTTGTCAAAATGGGACAAAACTCCACTATTTACAGTCA 6527 ||| | ||||||||||||||||| |||||||||| |||||||| |||||||||||| | Sbjct 2601512 CAACGTCTGGTTAGACTGTAATCCCGTCAAAATGGAACAAAACTGTACTATTTACAGT-A 2601570 Query 6528 AACCAGGCGTCGAGTTGATATAGTATTTAACTGAGCAGTCTTTCCTGACCACTCAATTTT 6587 |||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| || Sbjct 2601571 AACCAGGCGTCGAGGTCATATAGTATTTAACTGAACAGTCTTTCCTGACCACTCAACTT- 2601629 Query 6588 CTAAGAATTGTTGGaaaaaaaGTACAGCTTAAACGGGTCTGATATTTCGACTCGG 6642 ||||||||||||||||||| |||||||||||||||||||| | |||||||||| Sbjct 2601630 -TAAGAATTGTTGGAAAAAA--TACAGCTTAAACGGGTCTGA-ACTTCGACTCGG 2601680 >seq6705 Length=852356 Score = 210 bits (232), Expect = 4e-50 Identities = 176/216 (81%), Gaps = 25/216 (12%) Strand=Plus/Minus Query 1263 ATACGTTTATAAAATAGTTCTCATCGTTTGATTATGGATCTAAATCTAGAGTTTTCTAAT 1322 |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| | Sbjct 31914 ATACGTTTATAAAAAAGTTCTCATCGTTTAATTATGGATCTGAATCTAGAGTTTTCTATT 31855 Query 1323 TATCGTTAATAAACACAATGTGAATACATCGAGATAAGATTAAAATGT--------TGAC 1374 ||| |||||||||||| ||||||| || ||||||||||||| |||| Sbjct 31854 -----TTA--AAACACAATGTGTATACATC--GACAAGATTAAAATGTTGACAAAATGAC 31804 Query 1375 AAGATTAATGTTAAATTTTATACTTT--------CACGCATCATTTAATGAGCGGTATTC 1426 || ||||||||| ||||||||||||| |||||||||||||||| | ||||||| Sbjct 31803 AAAATTAATGTTGAATTTTATACTTTCACGCTTACACGCATCATTTAATGGGTGGTATTC 31744 Query 1427 ACTATTTGGTAGTGCGAAGAATACCGTTTAGTATAC 1462 | |||| |||||| |||||||||||| || |||||| Sbjct 31743 ATTATTCGGTAGTTCGAAGAATACCGCTTGGTATAC 31708 Score = 105 bits (116), Expect = 1e-18 Identities = 84/103 (82%), Gaps = 10/103 (10%) Strand=Plus/Minus Query 1457 GTATACATTGCACTACGAAATAGTGAATCGTCACTATTTCAGTTTCAGAGAATGAAAAGC 1516 ||||| |||||||||||||||||||||| |||||||||| | ||||||| |||||||||| Sbjct 31652 GTATAGATTGCACTACGAAATAGTGAATAGTCACTATTTTAATTTCAGATAATGAAAAGC 31593 Query 1517 CGTGCCCTGTAG----------AGGATCTTCGAGGACATGAAT 1549 ||||||||||| | || ||||||||||||||| Sbjct 31592 TGTGCCCTGTAGGCACTATGTATGTATTTTCGAGGACATGAAT 31550 Score = 86.0 bits (94), Expect = 1e-12 Identities = 143/212 (67%), Gaps = 46/212 (22%) Strand=Plus/Minus Query 1723 AAAAAGTCTGATTTCGGTTTTGAAACAA------TAGAAAACAATTTTATTATAACATTA 1776 |||||||||| ||| || ||||| || ||||||| |||||||||| || || | Sbjct 31495 AAAAAGTCTGGTTTTGGCCTTGAAGAAAAGAATTTAGAAAAGAATTTTATTACAATATAA 31436 Query 1777 AAAATGATCTGAAATTCGTCTGAATTGTGAATAGTACGGGCaaaaacaaattaaattctc 1836 |||| | ||||| |||| |||||||||||||||||| | ||| |||||| Sbjct 31435 AAAACG-----------GTCTGCATTGGGAATAGTACGGGCAAAAATAGATTCAATTCT- 31388 Query 1837 atataaaatagatacacataataaaattaaattgaatgaaaaatattaaaaaattttatt 1896 || |||||||| ||||||||||||| ||||| | Sbjct 31387 ----------------TATGATAAAATTTTATTGAATGAAAAA----AAAAA-------T 31355 Query 1897 aatcataaaacagactaaattttttGACCCGG 1928 ||||||||||||||| ||| |||||||||| Sbjct 31354 AATCATAAAACAGAC-AAAAAATTTGACCCGG 31324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83272924427100