Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq268 122 1e-23 >seq268 Length=1111824 Score = 122 bits (134), Expect = 1e-23 Identities = 128/169 (76%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 15556 AAAATGTCATAAGTGTTGAAAATAGAATTTTTCCATGACATTTATGTGTAAACACAGTTC 15615 ||||||| | ||||||||||| ||| |||||| |||| |||||||||| || | ||| Sbjct 266333 AAAATGTTAAAAGTGTTGAAACTAGTGTTTTTCTATGATATTTATGTGTTAATATTGTTA 266274 Query 15616 TACAAGTGTGATAGAAAATAAATAGAGAAAATTTTAGTCCAAGAAATCGCCTGATTTTTG 15675 ||| || |||| | |||| | ||| ||||||||| | | | ||||| ||| Sbjct 266273 TACTTTTGCGATAAAGAATACTAAAAGACAATTTTAGTTC------TTACATGATTGTTG 266220 Query 15676 TAAGGCGAGTGTAGAGCACAACCTCATCCGCTTCGCTTATGAGGCGTGC 15724 ||||||||| |||||||| | |||| ||||||||||||| ||||||| Sbjct 266219 TAAGGCGAGAGTAGAGCAGTATTTCATTCGCTTCGCTTATGTGGCGTGC 266171 Score = 113 bits (124), Expect = 6e-21 Identities = 117/154 (76%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 15556 AAAATGTCATAAGTGTTGAAAATAGAATTTTTCCATGACATTTATGTGTAAACACAGTTC 15615 ||||||| ||||||||||||| ||| |||||| ||||||||||||||| || | ||| Sbjct 264036 AAAATGTTATAAGTGTTGAAACTAGTGTTTTTCTATGACATTTATGTGTTAATATTGTTA 264095 Query 15616 TACAAGTGTGATAGAAAATAAATAGAGAAAATTTTAGTCCAAGAAATCGCCTGATTTTTG 15675 ||| || |||| | |||| |||||| ||||||||| | | | ||||| ||| Sbjct 264096 TACTTTTGCGATAAAGAATACTTAGAGACAATTTTAGTTC------TTACATGATTGTTG 264149 Query 15676 TAAGGCGAGTGTAGAGCACAACCTCATCCGCTTC 15709 |||||||| |||||||| | |||| |||||| Sbjct 264150 TAAGGCGATAGTAGAGCAGTATTTCATTCGCTTC 264183 Score = 104 bits (114), Expect = 3e-18 Identities = 87/108 (81%), Gaps = 8/108 (7%) Strand=Plus/Plus Query 1335 AAATAAAATACAAATACTTTTAAATCTTTCGCGCCATTGTCCACCCAGAAAAGAAAGGTA 1394 |||||||||| ||||| |||||| |||||||||||||| || ||| ||||||| Sbjct 263858 AAATAAAATAAAAATATTTTTAAGTCTTTCGCGCCATTATCTACCAAGAAAAG------- 263910 Query 1395 CAAAGGTACTGCGTATGGATTGTAAACGAACCTTATTAACATAGATAT 1442 |||||||||||| ||| |||||| | ||||||| | |||||||||| Sbjct 263911 -AAAGGTACTGCGCATGTGTTGTAAGCAAACCTTACTTACATAGATAT 263957 Score = 102 bits (112), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 15305 ATAGATATAGATATACAAACGATTAGTGGATTTTTAGTTTATTGCTAATTATAAATAAAC 15364 ||||||||| ||||||||||||| |||||||| | ||||||||||||||||||| |||| Sbjct 266419 ATAGATATAAATATACAAACGATAAGTGGATTCT-AGTTTATTGCTAATTATAATTAAAG 266361 Query 15365 TACATTGAATTAG 15377 ||||||||||||| Sbjct 266360 TACATTGAATTAG 266348 Score = 100 bits (110), Expect = 4e-17 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 15305 ATAGATATAGATATACAAACGATTAGTGGATTTTTAGTTTATTGCTAATTATAAATAAAC 15364 ||||||||| ||||||||||||| |||||||| | |||| |||||||||||||| ||||| Sbjct 263950 ATAGATATAAATATACAAACGATAAGTGGATTCT-AGTTCATTGCTAATTATAATTAAAC 264008 Query 15365 TACATTGAATTA 15376 |||||||||||| Sbjct 264009 TACATTGAATTA 264020 Score = 96.9 bits (106), Expect = 4e-16 Identities = 85/107 (79%), Gaps = 8/107 (7%) Strand=Plus/Minus Query 1336 AATAAAATACAAATACTTTTAAATCTTTCGCGCCATTGTCCACCCAGAAAAGAAAGGTAC 1395 || |||||| ||||| |||||| |||||||||||||| || ||| ||||||||||| Sbjct 266510 AAAAAAATAAAAATATTTTTAAGTCTTTCGCGCCATTATCTACCAAGAAAAGAAAG---- 266455 Query 1396 AAAGGTACTGCGTATGGATTGTAAACGAACCTTATTAACATAGATAT 1442 |||||||| ||| |||||| ||||||||| | | |||||||| Sbjct 266454 ----GTACTGCGCATGTGTTGTAAGCGAACCTTACTTAGATAGATAT 266412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63300221477092