Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq6705 196 9e-46 seq570 129 1e-25 seq1141 120 6e-23 >seq6705 Length=852356 Score = 196 bits (216), Expect = 9e-46 Identities = 173/216 (80%), Gaps = 25/216 (12%) Strand=Plus/Minus Query 23629 ATACGTTTATATAATAGTTCTCATCGTTTGATTATGGATCGAAATCTAGAGTTTTCTAAT 23688 ||||||||||| || |||||||||||||| |||||||||| |||||||||||||||| | Sbjct 31914 ATACGTTTATAAAAAAGTTCTCATCGTTTAATTATGGATCTGAATCTAGAGTTTTCTATT 31855 Query 23689 TATCGTTAATAAACACAATGTGAATACATCGAGATAAGATTAAAATGT--------TGAC 23740 ||| |||||||||||| ||||||| || ||||||||||||| |||| Sbjct 31854 -----TTA--AAACACAATGTGTATACATC--GACAAGATTAAAATGTTGACAAAATGAC 31804 Query 23741 AAGATTAATGTTAAATTTTATACTAT--------CACGCATCATTTAATGAGCGGTATTC 23792 || ||||||||| ||||||||||| | |||||||||||||||| | ||||||| Sbjct 31803 AAAATTAATGTTGAATTTTATACTTTCACGCTTACACGCATCATTTAATGGGTGGTATTC 31744 Query 23793 ACTATTTGGTAGTGCGAAGAATATCGTTTGGTATAC 23828 | |||| |||||| ||||||||| || ||||||||| Sbjct 31743 ATTATTCGGTAGTTCGAAGAATACCGCTTGGTATAC 31708 Score = 105 bits (116), Expect = 1e-18 Identities = 84/103 (82%), Gaps = 10/103 (10%) Strand=Plus/Minus Query 23823 GTATACATTGCACTACGAAATAGTGAATGGTCACTATTTCAGTTTCAGAGAATGAAAAGC 23882 ||||| |||||||||||||||||||||| |||||||||| | ||||||| |||||||||| Sbjct 31652 GTATAGATTGCACTACGAAATAGTGAATAGTCACTATTTTAATTTCAGATAATGAAAAGC 31593 Query 23883 CGTGCCCTGTAG----------AGGATCTTCGAGGACATGAAT 23915 ||||||||||| | || ||||||||||||||| Sbjct 31592 TGTGCCCTGTAGGCACTATGTATGTATTTTCGAGGACATGAAT 31550 >seq570 Length=10164 Score = 129 bits (142), Expect = 1e-25 Identities = 791/1249 (63%), Gaps = 69/1249 (6%) Strand=Plus/Minus Query 3836 ATTCTACCATTTCCGATGACGATTATGCTTTTGCTCAAGTAGTCTGGAACGAGTTTAAAA 3895 |||| | ||||| ||||| |||||| ||| ||| || ||||| | |||||| Sbjct 2721 ATTCAAATATTTCTGATGATGATTATCAACACGCTAAAGATGTTTGGAATCATTTTAAAT 2662 Query 3896 -TCAATACGCTTGGAGAGTACTCGGACTTATACTTAAAGACTGATGTCCTTCTCTTGACT 3954 || | || | ||| || ||| | | || ||||| |||||||| || | | | Sbjct 2661 GTCGAAACATGTT-AGATTATTCGAATCTTTATTTAAAAACTGATGTTCTATTACTAGCA 2603 Query 3955 GATGTCTTTGAAAACTTTAGACGTAGTTGTTTCAAGACATACAATTTAGACGCACTACAC 4014 ||| | |||||||||||||| || ||| | || || || | ||||| || ||| Sbjct 2602 GATATTTTTGAAAACTTTAGGTGTGTTTGCATAAAAACTTATGACTTAGATCCAGCTCAC 2543 Query 4015 TTTTATACAGCACCAGGTCT---TTCGAACGCTGCAATGTTAAAGCATACTGAAGTAGAA 4071 | |||||| || || || | || | | ||| |||||||| | ||| |||||||| Sbjct 2542 TATTATACCGCTCCCGGGTTAAGTTGGGATGCT---ATGTTAAAATACACTAAAGTAGAA 2486 Query 4072 CTTGAACTGTTAACTGATCCTGAGATGCT-TCTTTTCATTGAAAAGGGTGTTCGCGGTGG 4130 | || ||||||| ||| ||| | |||||| ||| || || |||| || || Sbjct 2485 TTAGAGTTGTTAACAGATATTGAACAAATATCTTTT-ATTAAATCAGGAATTCGAGGGGG 2427 Query 4131 GGTATCGATGTGTGCTAATAGACATGCTGAAGCTAACAACCGGTATATGGGCAAAGATTT 4190 || || ||| || | || ||||| |||||||||| || ||| |||| Sbjct 2426 TGTTTCTCAATGTAGTACTCGATATGCTAAAGCTAACAATGTTTACATGTCT---GATTA 2370 Query 4191 TGATTCAAACAACCCCGAAACATACCTGATGTA-CTATGATGTAAATAATTTGTATGGCG 4249 || ||| | ||| | | |||| || ||| |||| ||||||||| |||||| Sbjct 2369 CAATGAAAAAGATATAGAATCCTTTTTGATTTATCTA-GATGCAAATAATTTATATGGCT 2311 Query 4250 CAGCGATGAGTATGTCTTTACCAAAGGGTAAATTTGAATGGGTTGAAAATGTAGATGATG 4309 || ||| | | | || | ||||| ||| | ||||| | | | ||| Sbjct 2310 GGGCTATGTCGCAATATCTGCCTACAGGTAATTTTAAGTGGGTAAGCACAGAAACAGATT 2251 Query 4310 TAGATCAGTTTTTCAATGATGATGAGAGTGTAGGCTACATCCTTGAAGTAGATCTACACT 4369 | || ||| | ||| || | || |||| | |||| | ||||||||||| | | Sbjct 2250 TTAAT--GTTAGTGAATCATCAGAAG----TAGGATTCATCTTAGAAGTAGATCTTGAGT 2197 Query 4370 ATCCTGAGAATTTACATGATCTACACAAAGATCTACC--TTTATGCCCAGAACATTTTGT 4427 |||| ||||||||||| ||| ||| |||| ||| | || |||| || Sbjct 2196 ATCCCATTCATTTACATGATAAACATTCTGATTTACCACTTTGTCCCGAGAATAT----- 2142 Query 4428 ACCACCTGGTA--GCAAGCAACAAAAACTCACGAC-AACTCTGTACGATAAAAATAATTA 4484 |||| ||| || | | | || | | | || | || | ||||| |||| || Sbjct 2141 ACCAGTGGGTGATGCTAAAGATATAAGATTAATTCTAAATTTGCAAAATAAACATAAATA 2082 Query 4485 TGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAAT 4544 ||| || |||||| ||||| | ||||| |||| | | |||||| || ||||| Sbjct 2081 TGTAATACACTATCGTAATTTAATACAATCTTTAAAAATGGGTTTAAAACTATCAAAAAT 2022 Query 4545 ACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATAC 4604 || | | || ||||| |||||| ||| | ||| ||||| ||| ||||| Sbjct 2021 TTACAGAATATTACAATTTAGTCAATCACCATGGTTAAAAAAGTATATAGATCTTAATAC 1962 Query 4605 CGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAA 4664 || ||| |||||||| || || || || |||| |||||| |||||||||| Sbjct 1961 TCAATTAAGAACCCTAGCTAATTCCGACTTTGAGAAGGACTTCTATAAACTAATGAATAA 1902 Query 4665 TGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA---TATAAAGATATATATTTAAG 4721 | | |||||||| ||||| ||||| ||| | ||||| | | || || | ||| Sbjct 1901 TTCTGTTTTTGGGAAGACAATGGAAAATAT-TGAAAAGCGTGTTAATGTAAAACTTT--T 1845 Query 4722 AACAAAGTGGCAAAGTCAATACAATGTAT---------CGGATTTAGTATGTAGACCAAA 4772 ||| | ||| ||| | || || |||| |||||| || | ||| | Sbjct 1844 AACTCATTGGGAAAATAAAGGTAAAGTATTGGGGGCACGGGATTTGATAGCTCAACCTCA 1785 Query 4773 CTTCCACAGCCTTACAATTTTTGATGAGGATATGGT-----TATAGTTGAACTTAAAAAA 4827 || || || ||| | | ||| || || | || | ||||||| || ||| Sbjct 1784 TTTTCATAGTCTTTCTGTATTTTCAGAAAATCTTGTAGCCATCCAGTTGAATAAAACAAA 1725 Query 4828 GCTAGAGTTTGCTTCAACAAGCCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAAA 4887 || || || || || || |||||| |||| ||| |||| ||||| | || ||| Sbjct 1724 GC-----TTATCTATAATAAACCAATCTATTTAGGATTTTGTATTTTAGACATTTCAAAA 1670 Query 4888 ATTTATATTTATGACTTTCATTACAATTATGTTATGCAAAAT-TATGTAAAT--ACCTCA 4944 | | || ||||| |||||||| ||||| |||||| | || ||||| | | Sbjct 1669 ACGTTGATGTATGATTTTCATTATAATTA---CATGCAAGCTAAATTTAAATCAAATGTA 1613 Query 4945 AAATTATTGTACACTGACACAGATAGTCTAATTTACCAATTT--AATGTACCCAACATCT 5002 ||||||||||| || || || |||||| ||||||| || || || | | || | | Sbjct 1612 AAATTATTGTATACGGATACTGATAGTTTAATTTATAAAATTGAAACGAA--GAATTTTT 1555 Query 5003 ATGAAGACATCAAACGTGATATTTCAA---GGTTTGATACCTCCAATTA 5048 || | ||||| |||| ||||||| || |||||||| || |||| Sbjct 1554 ATAATGACATAAAACCAGATATTTTAAAATATTTTGATACTTCAGATTA 1506 >seq1141 Length=34294 Score = 120 bits (132), Expect = 6e-23 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 7272 CATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAA 7331 |||||| ||||| |||||||||||||||| |||||| || |||||||||||||| || Sbjct 28706 CATGTCTGTATTCACATGATCATCATAAACATGCTTAAGGTTCATTTCATCTTGCTTAAA 28647 Query 7332 CAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTG 7391 || || | ||||||||| ||||| | | || || || |||||| | || ||||| Sbjct 28646 GAGAACAATAAAGTTTGCGTTATCACGTACCAACTGTTTAGGTATTTTGCTGTAGGTTTG 28587 Query 7392 ACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAA 7437 ||| | ||| || | || | ||||||||| ||||||| ||||| Sbjct 28586 ACATAAATAAAAACAATCCAATCCCTTGTGTCTACCCATGGAGAAA 28541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97965850998792