Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006662.1 Length=17477 Score E Sequences producing significant alignments: (Bits) Value seq129 233 2e-57 seq6705 210 2e-50 >seq129 Length=3256488 Score = 233 bits (258), Expect = 2e-57 Identities = 163/181 (90%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 3584 CCGAGTCGAAATATCAGACCCGTTTAAGCTGTACtttttttCCAACAATTCTTAGAAAAT 3643 |||||||||| | |||||||||||||||||||| ||||||||||||||||||| || | Sbjct 2601680 CCGAGTCGAAGT-TCAGACCCGTTTAAGCTGTA--TTTTTTCCAACAATTCTTA--AAGT 2601626 Query 3644 TGAGTGGTCAGGAAAGACTGCTCAGTTAAATACTATATCAACTCGACGCCTGGTTTGACT 3703 |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| ||| Sbjct 2601625 TGAGTGGTCAGGAAAGACTGTTCAGTTAAATACTATATGACCTCGACGCCTGGTTT-ACT 2601567 Query 3704 GTAAATAGTGGAGTTTTGTCCCATTTTGACAAGATTACAGTCTAACCAGGCATTGAATAA 3763 ||||||||| |||||||| |||||||||| ||||||||||||||||| | |||||||| Sbjct 2601566 GTAAATAGTACAGTTTTGTTCCATTTTGACGGGATTACAGTCTAACCAGACGTTGAATAA 2601507 Query 3764 T 3764 | Sbjct 2601506 T 2601506 >seq6705 Length=852356 Score = 210 bits (232), Expect = 2e-50 Identities = 176/216 (81%), Gaps = 25/216 (12%) Strand=Plus/Plus Query 8759 GTATACTAAACGGTATTCTTCGCACTACCAAATAGTGAATACCGCTCATTAAATGATGCG 8818 |||||| || |||||||||||| |||||| |||| |||||||| | |||||||||||||| Sbjct 31708 GTATACCAAGCGGTATTCTTCGAACTACCGAATAATGAATACCACCCATTAAATGATGCG 31767 Query 8819 TG--------AAAGTATAAAATTTAACATTAATCTTGTCA--------ACATTTTAATCT 8862 || ||||||||||||| ||||||||| |||||| |||||||||||| Sbjct 31768 TGTAAGCGTGAAAGTATAAAATTCAACATTAATTTTGTCATTTTGTCAACATTTTAATCT 31827 Query 8863 TATCTCGATGTATTCACATTGTGTTTATTAACGATAATTAGAAAACTCTAGATTTAGATC 8922 | || ||||||| |||||||||||| ||| | |||||||||||||||| ||||| Sbjct 31828 TGTC--GATGTATACACATTGTGTTT--TAA-----AATAGAAAACTCTAGATTCAGATC 31878 Query 8923 CATAATCAAACGATGAGAACTATTTTATAAACGTAT 8958 |||||| |||||||||||||| |||||||||||||| Sbjct 31879 CATAATTAAACGATGAGAACTTTTTTATAAACGTAT 31914 Score = 104 bits (114), Expect = 3e-18 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8693 CTACAGGGCACGGCTTTTCATTCTCTGAAACTGAAATAGTGACGATTCACTATTTCGTAG 8752 ||||||||||| |||||||||| ||||||| | |||||||||| |||||||||||||||| Sbjct 31581 CTACAGGGCACAGCTTTTCATTATCTGAAATTAAAATAGTGACTATTCACTATTTCGTAG 31640 Query 8753 TGCAATGTATAC 8764 |||||| ||||| Sbjct 31641 TGCAATCTATAC 31652 Score = 86.0 bits (94), Expect = 7e-13 Identities = 143/212 (67%), Gaps = 46/212 (22%) Strand=Plus/Plus Query 8296 CCGGGTCaaaaaatttagtctgttttatgattaataaaattttttaatatttttcattca 8355 |||||||||| ||| |||||||||||||||| ||||| ||||||||||| Sbjct 31324 CCGGGTCAAATTTTTT-GTCTGTTTTATGATTA-------TTTTT----TTTTTCATTCA 31371 Query 8356 atttaattttattatgtgtatctattttatatgagaatttaatttgtttttGCCCGTACT 8415 || |||||||| || |||||| ||| | |||||||||||||| Sbjct 31372 ATAAAATTTTATCATA-----------------AGAATTGAATCTATTTTTGCCCGTACT 31414 Query 8416 ATTCACAATTCAGACGAATTTCAGATCATTTTTAATGTTATAATAAAATTGTTTTCTA-- 8473 |||| |||| ||||| | ||||| || || |||||||||| ||||||| Sbjct 31415 ATTCCCAATGCAGAC-----------CGTTTTTTATATTGTAATAAAATTCTTTTCTAAA 31463 Query 8474 ----TTGTTTCAAAACCGAAATCAGACTTTTT 8501 || ||||| || ||| |||||||||| Sbjct 31464 TTCTTTTCTTCAAGGCCAAAACCAGACTTTTT 31495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 55803258482560