Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq183 120 3e-22 seq1092 109 6e-19 >seq183 Length=738700 Score = 120 bits (132), Expect = 3e-22 Identities = 119/153 (78%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 21489 AATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATC 21548 ||| ||||||| ||||||| || | |||||| || |||| || ||||||| || Sbjct 171519 AATACAAACCT-CATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTC 171461 Query 21549 CTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGG 21608 |||||||||| | |||||||||||| ||||| ||| || |||||||| |||||||| | Sbjct 171460 CTCTCTTTTTCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAG 171401 Query 21609 CAGCAAATGCAACTAATCGTTCACCGTATGTAG 21641 | |||||||| || | || |||||| |||||| Sbjct 171400 CGGCAAATGCTACAATTCTTTCACCAAATGTAG 171368 >seq1092 Length=556928 Score = 109 bits (120), Expect = 6e-19 Identities = 216/316 (68%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 131864 ATGACTCCTGTTAAACCTATGTTGGCTGATGTATGCGAATCTCTAGAAAAAGCAATAGAT 131923 ||||||||| || || ||||| || || | || |||| | |||| || || | Sbjct 531360 ATGACTCCTATTCTGCCAATGTTAGCAGAGGCCTGTAAATCAATTGAAATGGCTATGAAA 531419 Query 131924 AAATATAAAGATGGAATGTATTCAGAGGTAAAATATGATGGGGAGCGTGTACAAATTCAT 131983 || | | | |||| |||| ||| || |||| |||||||| |||||||| ||| ||||| Sbjct 531420 AAGTGTCCAAATGGTATGTTTTCTGAAATAAAGTATGATGGTGAGCGTGTCCAAGTTCAT 531479 Query 131984 AAAAAAGATAATGTATACAATTATTTTAGTAGAAATTTAAAACCTGTTCTTACTCATAAA 132043 ||||||| ||| | | || |||||| | || | |||| || || | | |||||| Sbjct 531480 AAAAAAGGTAAGGAGTTTAAGTATTTTTCTCGAGCTCTAAAGCCAGTAATGTCACATAAA 531539 Query 132044 ATTGATGGATTTGATAAACTGTTGA-CTGATGCATTTCCCACAGCAAAAAACTTCATTTT 132102 | || |||| | | ||| || | | | |||||||| | || || | | ||||| Sbjct 531540 GTAAAT-CATTTTAAAGACTATTTACCACAAGCATTTCCAAAAGGGGAAGATATGATTTT 531598 Query 132103 AGATGCGGAATTAATAATGATAGAT---ACAAAATCAAATTCATTTTTACCATTTGGTTC 132159 ||||| ||| || ||||| ||||| | || | ||| || ||||| ||||| | Sbjct 531599 GGATGCAGAAGTATTAATGGTAGATGTGAAAACAGGAAAACCA---TTACCGTTTGGCAC 531655 Query 132160 ATTAGGTATACATAAA 132175 |||||| |||||||| Sbjct 531656 TTTAGGTGTACATAAA 531671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531851944911520