Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq401 526 3e-144 seq183 116 5e-21 seq1092 102 1e-16 >seq401 Length=384550 Score = 526 bits (582), Expect = 3e-144 Identities = 1203/1791 (67%), Gaps = 50/1791 (3%) Strand=Plus/Plus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||| | || |||||||||| | || || ||||| || || | ||| |||||||| Sbjct 356777 TTGTCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCCA 356836 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||| || || | ||||| | | |||||| ||| || | ||| |||| | || Sbjct 356837 GTTTTAAGCCCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTTGGT 356896 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || || | ||| ||||| | ||| || |||||||| || || || ||||| || || ||| Sbjct 356897 TCAGCAACATGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCTGCC 356956 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62224 |||| || |||| || || ||||||||| | ||||| || || || | || | || Sbjct 356957 ATTTGGATCGTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATT-TC 357015 Query 62225 TTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCAT-AATCCTA---TTCT 62277 || ||||| || |||| ||||| || ||||| || || ||| || || | Sbjct 357016 TTTTGGAATTCTTTCGATATTTTGAATTGA---ACCAT-TGTTATGAATGATAAGGTTTT 357071 Query 62278 TGATCTCATCATTCCATA-ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 62336 | || || |||| ||||| || | || || ||||| || | | ||||| | || ||| Sbjct 357072 TCATGTCTTCATCCCATAGATCTGCTTGCG-TTAAATCTTTCAAAAGATGATGGTTCACT 357130 Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 |||||||||||||| ||||| ||||| | || || || ||| | ||||| | Sbjct 357131 ACTTGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAG 357190 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 || ||||||||||| | |||||| || || ||||| || |||||||| || | | ||| Sbjct 357191 GATTCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCTAAAAGCAAA 357250 Query 62457 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 62516 || | ||| |||| | | ||||| |||||||||| ||||||||||||| ||| Sbjct 357251 GAGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGTCC 357310 Query 62517 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTAC 62575 | |||| ||| | |||||| |||||| | | | || | Sbjct 357311 GTAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGGCTAT-TTTT 357369 Query 62576 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 62635 | | ||| |||| ||||| || || |||| |||||| || || ||||| || || || Sbjct 357370 AAAGGTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCCATA 357429 Query 62636 ATAAATGGTTTCGAAGATCTTCTTATTTAGAT--CTTGTGCTTCCAGGCTATCAAATGGA 62693 |||||| || || || || | | ||||| | ||| || || || ||| ||||| Sbjct 357430 ATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCA--CTTTCATATGGA 357487 Query 62694 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62753 ||| | | || || | || || || |||||||||||||| || || ||||| ||| Sbjct 357488 TAACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGT 357547 Query 62754 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62813 ||| | || || ||| ||||||||||| ||||| ||||| | ||| |||||||| || Sbjct 357548 CTCATGTTTGAATTTTTAGCTTCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTT 357607 Query 62814 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA---TCAAATCGCCCA 62870 | |||| | |||| ||| || ||||| | || |||| | | | | Sbjct 357608 AAATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTTTGTCT 357667 Query 62871 TCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 62930 || | ||||||||||| | || | ||||| | |||||| || || || |||| | Sbjct 357668 TCATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCAT---CT 357724 Query 62931 TCC---GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 62987 ||| | |||| || || || ||||| ||||| ||||| || || || || | ||| Sbjct 357725 TCCGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTT 357784 Query 62988 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63047 |||||||| || ||| ||||||| | || ||||| || || ||||| || ||||| || Sbjct 357785 TGTTGATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTCT 357844 Query 63048 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGT 63102 | || | || || || |||||||| | | | | || ||| ||| | | | Sbjct 357845 ACTTGTGCCTCAATTATAGCTTTCCATAAAATTTGTGCACGAACTTGTTTA-ACA----T 357899 Query 63103 ATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63162 | || | ||| ||| ||| || |||||| || || || |||||||| | Sbjct 357900 ACTTCTTCTCTTGTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCCAGCAGTCAG 357959 Query 63163 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63222 | | |||||| | | | |||||||| | ||| | | ||| | | |||| | Sbjct 357960 CGAGGCCAGGAGAATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCTACTCTCT 358019 Query 63223 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 63281 |||| || | |||||||||||||||||| ||| || || ||||||| | ||| || Sbjct 358020 TCATGAATAAATCAGGAATCCAAAGAGC-ATAGAAAAGCTCTCTGGCACGCACTTCTTCT 358078 Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 || |||||||||||||| || || | || | | |||||||| |||||| ||||| || Sbjct 358079 TTCCCTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGTTCTAAA 358138 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401 || || || | | || || | ||| ||||| || ||||| | ||||| || || || Sbjct 358139 TAAATAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCAGTATTG 358198 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461 || || || || ||||| || | | || ||||| | ||||| || |||| ||||| Sbjct 358199 TTGTACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCAATATAT 358258 Query 63462 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63521 |||| | || | ||| | || |||||| ||||| ||||| || || ||| Sbjct 358259 GTTCCCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGACTTTGATATT 358318 Query 63522 AATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGT 63581 ||||| | | |||| || |||||||||||||| || || ||||| |||| || | Sbjct 358319 AATGCTGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATAGCAATT 358378 Query 63582 AGAAAACAGCTAGACATTTGGTGACGACTA---GTTCCCGCATTAAATAAG-GTAGGAGA 63637 | |||||| ||||| | ||| | ||| ||| | || | | | ||| || ||| Sbjct 358379 AAAAAACAAGAAGACA---GCTGAGGTCTAGGTGTTGCTGC-TGAGAAAAGAGTTGGACT 358434 Query 63638 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63697 || || ||||| |||||||||| | | |||||| |||| || || | ||||| || Sbjct 358435 GGCATGAGTAAAGTATTTTTCAGATAACAAATTGTATGTCTTGATGGCAGCATCTATGTC 358494 Query 63698 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 | ||| || || | ||| || | ||||||||| || || || || || Sbjct 358495 ATCTCCATGTATACCAATTGCCACTCTCATTAACATATGTTGTGGCCTCTC 358545 >seq183 Length=738700 Score = 116 bits (128), Expect = 5e-21 Identities = 160/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || ||| | ||| ||| || || || || |||||||| || | ||||| Sbjct 171511 CCTCATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTCTTTT 171452 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| ||||| || |||||| ||||| ||||| || || || ||||| | Sbjct 171451 TCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCAAATG 171392 Query 33446 CAATAAGTCTCTCTCCATAACCGGC-GCTGT-CATG-TATCCACTTTTGAGCCCAATCGG 33502 | | || ||| || ||| | || | | | | || |||||||| |||||||||| | Sbjct 171391 CTACAATTCTTTCACCAAATGTAGCAGATTTGCTTGCTATCCACTGGAGAGCCCAATCTG 171332 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 ||||||| |||||||| || | || |||| ||||| || Sbjct 171331 CCTTCTTCTTTACACATGGAAGAGTCTCTACAGCATTGAA 171292 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 ||||||||| ||||| | ||||| || || |||||||| || ||||||||||| || || Sbjct 171050 ATACATTTCTGAATGTACATTTTCCATTGCAATCTGAAAGCCATAGAAACATCTGGCTTC 170991 Query 33654 GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 || | ||||| ||| | || | ||| ||| ||||||||| ||||| || || Sbjct 170990 TGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATTTTCATTGACTATGCCATCTGA 170931 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 || ||||| || ||||||||||| || || || Sbjct 170930 TGCAGCAAAGAAAGCCAATACATGCTTAATGAA 170898 >seq1092 Length=556928 Score = 102 bits (112), Expect = 1e-16 Identities = 243/366 (66%), Gaps = 5/366 (1%) Strand=Plus/Plus Query 156558 ATGACTCCAATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTTTAAA 156617 |||||||| ||| || |||||||| || | ||| | || | | | ||| | ||| Sbjct 531360 ATGACTCCTATTCTGCCAATGTTAGCAGAGGCCTGTAAATCAATTGAAATGGCTATGAAA 531419 Query 156618 AAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTCAT 156677 || | |||| || |||||| | ||| | || || |||||||| | || ||||||||| Sbjct 531420 AAGTGTCCAAATGGTATGTTTTCTGAAATAAAGTATGATGGTGAGCGTGTCCAAGTTCAT 531479 Query 156678 AAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATAAA 156737 ||||| ||| |||||| | ||| | || | || |||||| | || |||||| Sbjct 531480 AAAAAAGGTAAGGAGTTTAAGTATTTTTCTCGAGCTCTAAAGCCAGTAATGTCACATAAA 531539 Query 156738 GTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTG 156797 || || || | ||||| || |||| |||||||| ||||| ||| | ||| Sbjct 531540 GTAAATCATTTTAAAGACTATTTACCACAAGCATTTCCAAAAGGGGAAGATATGATTTTG 531599 Query 156798 GATTCTGAAATTGTTCTTGTAGACG----AACATAATGTACCGCTCCCGTTTGGAAGTTT 156853 ||| | ||| | | | ||||| | |||| | ||| | |||||||| | ||| Sbjct 531600 GATGCAGAAGTATTAATGGTAGATGTGAAAACAGGAAA-ACCATTACCGTTTGGCACTTT 531658 Query 156854 AGGAATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTG 156913 ||| |||| ||| || ||| | |||| | | | | || || | | | |||||||| Sbjct 531659 AGGTGTACATAAACAGTCAGAGTTTAAAGATGCCCAAGTATGCTTATACATATTTGACTG 531718 Query 156914 TTTGTA 156919 |||||| Sbjct 531719 TTTGTA 531724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622889982299680