Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_007029.1 Length=6307 Score E Sequences producing significant alignments: (Bits) Value seq6705 136 2e-28 seq633 80.6 1e-11 >seq6705 Length=852356 Score = 136 bits (150), Expect = 2e-28 Identities = 269/399 (67%), Gaps = 0/399 (0%) Strand=Plus/Plus Query 1519 TCTTGCATTTTATTACGAATACTGTTCTGAATAGATTGAGTGTCTAATGTAATCCAACCT 1578 ||||||||||| |||||||| | ||| ||| || | || ||| || ||| | Sbjct 117667 TCTTGCATTTTGTTACGAATCGTATTCGAAATCAGCTGCGGATCAAATTCAACCCATTTT 117726 Query 1579 TTCTCACGGCCGTACTCTTCAACATATGTGAGCAACACTGTTCTTGCAGTTTCATCTAAT 1638 || ||| | | | | || |||||| | | || || ||||||||| ||||||||| Sbjct 117727 TTTTCAGTGGCATGTTTTTTAACATAGTTCAATAAAACAGTTCTTGCATTTTCATCTAGA 117786 Query 1639 CCTGGTCTGATAGTTGCTCCTTCGACATCGTAAGCTCKAGCTCTTGACCCGGTTAATGAA 1698 || || || | | | | ||| || | || | || | | || || |||| ||| Sbjct 117787 CCGGGCCTTACACTCGTTCCATCCAAGTCAAATGCATTCGGTTTTTTTCCAGTTAGAGAA 117846 Query 1699 CAGATGGTCAATGCACTCTTAGTGAAAATTTCGACCAATAACAATCGAGCCAATGATTTG 1758 || || | ||||| ||| || |||||||| | |||||| ||| || | | |||| Sbjct 117847 CATATACTTAATGCGTTCTCGGTAAAAATTTCCAGTAATAACGTTCGTGCAAGGGTTTTG 117906 Query 1759 CAATCTTTTGACAATCTCTTGCAATTACTAAGCTTTATGGCATTGATGTAGACATTGGTA 1818 | ||||| ||| | | || | ||| || || | |||||||| | ||| || | | Sbjct 117907 CTGTCTTTCGACGTTATTTTACTATTGCTTAGTTGAATGGCATTTACGTACACTCGTGAA 117966 Query 1819 TGGGGCATGAGTTCTACAAGTCCCGGAGCCATTTGACGATGCTTTAAGGTCCATCTTGAG 1878 || |||| |||||| || || || | ||| |||||||||| ||||||||||||| Sbjct 117967 TGTGGCAGGAGTTCAACGAGACCACTTTTCTTTTCCCGATGCTTTAGGGTCCATCTTGAG 118026 Query 1879 TCATTTTCATCGTATTCTGGAGGTAAAACAAATTTTCGC 1917 ||||| |||||| ||||| |||||| ||| || ||| Sbjct 118027 TCATTCGGATCGTACTCTGGTGGTAAAGTAAACTTGCGC 118065 >seq633 Length=131030 Score = 80.6 bits (88), Expect = 1e-11 Identities = 120/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 1746 AGCCAATGATTTGCAATCTTTTGACAATCTCTTGCAATTACTAAGCTTTATGGCATTGAT 1805 ||| ||||||||||||||||| || | ||| || | | | || | | | ||| Sbjct 97357 AGCTAATGATTTGCAATCTTTCGATACATGCTTACAGTGATTGAGGTCTCCAGAGCTGAC 97416 Query 1806 GTAGACATTGGTATGGGGCATGAGTTCTACAAGTCCCGG-AGCCATTTG-ACGATGCTTT 1863 | | ||| | | |||||||| |||||||||||||| || || ||||| |||| ||| Sbjct 97417 GAAAACACCGCTTTGGGGCATAAGTTCTACAAGTCCTGGCAG--ATTTGTTCGATACTTC 97474 Query 1864 AAGGTCCATCTTGAGTCATTTTCATCGTATTCTGGAGGTAAAACAAA 1910 || |||||||||| |||| |||| ||||| || |||| ||| || Sbjct 97475 AATGTCCATCTTGTATCATCAGCATCATATTCCGGTGGTAGAACGAA 97521 Lambda K H 0.635 0.409 0.914 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20065541144912