Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq326 230 2e-55 seq53 86.0 6e-12 >seq326 Length=503882 Score = 230 bits (254), Expect = 2e-55 Identities = 657/995 (66%), Gaps = 34/995 (3%) Strand=Plus/Plus Query 62039 AAAGTCGTTGCCGCATATTTTGTCGAATGGGGCGTTTATCCTAGAAACTTTCCTGTAGAT 62098 || || |||| || || ||||| |||||||| |||||||||||||| | ||| || || Sbjct 280451 AAGGTTGTTGGTGCTTACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCGTGGAC 280510 Query 62099 CGAGTGCCTACTCCTAATCTATCGCATGTTCTCTATGGATTTATTCCTATATGCGGCGGC 62158 || | || | || ||| || | ||| || | || || ||||| || || || || || Sbjct 280511 CGTATACCAATCCCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGT 280570 Query 62159 GACGGCATTAACGACAGTCTCAAGACCATAACCGGTAGTTTTGAAGCTCTTCAGCGGTCG 62218 || || || ||||||||| | || || || ||||| |||| | ||| | || Sbjct 280571 GATGGAATCAACGACAGTTTGAAAGAAATTGAGGGAAGTTTCCAAGCGTTACAGAGATCT 280630 Query 62219 TGTTCGGGTCGAGACGACTTTAAAGTGTCGATTCATGACCCGTGGGCTGCCGTCCAGAAA 62278 || || ||||| ||||||||||| || ||||| ||||| ||||||||| | || ||| Sbjct 280631 TGCAGTGGCCGAGAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAA 280690 Query 62279 CCACAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTTGGTCAATTGATG 62338 ||||||||| | | | | ||||| |||||||||||||| || ||||| || |||||| Sbjct 280691 CCACAAAAAGGACTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATG 280750 Query 62339 GCAGCCAAACTGGCGAATCCTCACATTAAAGTGTTACCTTCGATAGGCGGCTGGACATTA 62398 | |||| || | ||| | | || | | ||||| || ||||| ||||| | Sbjct 280751 TCTTTAAAACAAGCAAGACCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTC 280810 Query 62399 TCCGATCCGTTCTTTTATTTTCACGATGTGGCCAAACGCAAGATTTTTGTCGATTCCGTC 62458 | ||||| ||||| | || | || || || | | ||| | || || || Sbjct 280811 GCTGATCCATTCTTCTTCTTCGATGACAAGGTAAAGAGAGCGCGTTTCATTGACTCTGTA 280870 Query 62459 ATAGAATTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGATTGGGAGTTTCCC 62518 | ||| || | || ||||||||||||||||||||||| ||||| || ||||| || || Sbjct 280871 AAAGACTTCCTTCAAACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCT 280930 Query 62519 GGCGGGAAAGGCGCCAATCCCAACGTAGGCGACGTCGAACGCGATCGCGAAACGTACACG 62578 || || || ||||| || || | | || | ||| | | ||| | ||| || | | Sbjct 280931 GGAGGTAAGGGCGCAAACCCGACACTTGGTG--GTCCTAAG-GATGGTGAA--GTCTATG 280985 Query 62579 ATT--CTGTTGAGAGATTTACGCGAAGCCCTCGACCGTCTCTCAATCGAAACG---AATC 62633 || | ||| || | || ||| || || | || | |||| | || Sbjct 280986 TTTTATTAATGAAGGAGCTTCGAGAAATGCTTAACGAATTATCCAATGAAATGGGCAA-- 281043 Query 62634 GAACGTACGAATTGACTAGCGCGATCAGCGCCGGCGATGACAAAATTGCCGTAGTCGATT 62693 ||| ||||||||| || || || || || || |||||||| || || || | Sbjct 281044 GAA-GTACGAATTAACATCAGCTATTAGTGCTGGATGGGACAAAATCCAAGTTGTAGACT 281102 Query 62694 ACACTGAAGCGCAAAAATATTTGGATTATAtttttttAATGACATACGATTTCAAAGGAG 62753 ||| | ||||| || || |||| |||||||| | |||| ||||| || || || | Sbjct 281103 ACAAAGCTGCGCAGAATTACATGGACCATATTTTTGTTATGAGCTACGACTTTAAGGGTG 281162 Query 62754 CTTGGTCGAATAGCGAT---TTGGGATATCAAACGACTCTGTACGCGCCTTCGTTTAACC 62810 ||||||| ||| ||| || || ||||||| | ||||| || || || ||| Sbjct 281163 CTTGGTCCAAT---GATACATTAGGTCATCAAACCGCACTGTATGCTCCCGAGTGGAACT 281219 Query 62811 CTAAAGAGCATTATACGACCGATTTTGCCGTTC-GT-GCTAT--GCTCAAGCAAAAAGTC 62866 | || || |||||| || || || | |||| || |||| ||||||| || Sbjct 281220 CAAAGGAAACTTATACCACAGACTTCGGTGTTCAGTACCTATTGGCTCAAG------GTG 281273 Query 62867 GAAAAC--AAAAAGATTATAGTCGGCGTGGCCATGTACGGTCGAGGTTGGACCGGCGTCG 62924 ||| | || || ||| | || || || || ||||| || || || |||||||| || Sbjct 281274 TAAACCCGAAGAAAATTGTCGTAGGTGTTGCAATGTATGGACGTGGGTGGACCGGAGTAC 281333 Query 62925 GTGACTTTGTCGACGAAAATAATCCATTTTCCGGCACGGCTAAGGGACCGATCAAAGGTA 62984 | || | | || |||||| || | || | || | ||||| ||| || | Sbjct 281334 ACAA--TTATACA-GATGGTAATCCTTTCACGGGGATCGCAACAGGACCTTGCAAGGGCA 281390 Query 62985 CCTGGGAGGACGGAGTCGTCGATTATAGAGAGATT 63019 | ||| |||| || || |||||||| || || ||| Sbjct 281391 CATGGCAGGATGGTGTGGTCGATTACAGGGAAATT 281425 >seq53 Length=2198565 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || |||||| | || || ||| | |||||| | ||| | ||| | Sbjct 1830757 AATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTC 1830816 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | |||||| || ||| ||||| ||||| || || || || || Sbjct 1830817 TGACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 1830876 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | ||||| | | || || || | ||||||| | | | | ||||| || Sbjct 1830877 GCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAA 1830936 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| ||||| || | ||||| || | | || || ||||||| Sbjct 1830937 CATTCAAAAGGAATCAACACTTCATCTTGTGTTACGTCTCAGGGGAGGAA 1830986 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| |||||| | || |||||| | ||||| | || | ||| | Sbjct 1830985 AATGCAAATTTTTGTTAAAACACTGACAGGAAAAACCATCACATTGGAGGTTGAACCTTC 1831044 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | || ||| || || ||||| ||||| || || || || || Sbjct 1831045 AGACACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCA 1831104 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTAT 26945 ||| | || || | || || || ||| | ||||||| ||| ||||| |||| Sbjct 1831105 GCAACGTCTTATCTTCGCTGGAAAGCAATTGGAAGATGGCCGAACGCTGTCAG--ACTAC 1831162 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 ||||||||||| ||||| || | ||||| || || | || ||||| || || Sbjct 1831163 AACATTCAAAAGGAATCAACCTTGCATCTTGTACTCCGTCTGAGAGGTGGCAA 1831215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478618434858560