Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq401 163 7e-35 >seq401 Length=384550 Score = 163 bits (180), Expect = 7e-35 Identities = 529/815 (65%), Gaps = 10/815 (1%) Strand=Plus/Minus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || || |||||||||||| | || || |||||||| ||| | || | ||||| || Sbjct 358539 CCACAACATATGTTAATGAGAGTGGCAATTGGTATACATGGAGATGACATAGATGCTGCC 358480 Query 363514 ATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTAC 363573 || | ||||| || | || || || || || |||| ||||| | | | Sbjct 358479 ATCAAGACATACAATTTGTTATCTGAAAAATACTTTACTCATGCCAGTCCAACTCTTTTC 358420 Query 363574 AATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGAT 363633 || | ||| | || || ||| |||||||||| ||| | | |||| || || Sbjct 358419 TCAGCAGCAACACCTAGACCTCAGCTGTCTTCTTGTTTTTTAATTGCTATGAGAGATGAC 358360 Query 363634 TCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGC 363693 || |||||||||| ||| || || ||| | || | || || ||| |||||| Sbjct 358359 AGTATTGAGGGTATCTATGATACCCTAAAGCAAGCAGCATTAATATCAAAGTCTGCAGGT 358300 Query 363694 GGAATTGGTGTATCGATCCACAATGTTCGTGCACAG--AACAGTTACATTCGCGGCACAG 363751 ||||||||| || | || | | | || || |||| || ||| ||| ||| Sbjct 358299 GGAATTGGTCTACATGTTCATTGTATAAGAGCTAAGGGAACA--TATATTGCCGGAACAA 358242 Query 363752 GGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACG 363811 ||| || ||||| | || || ||| | | |||| |||||||||| || || | Sbjct 358241 ATGGAGTTTCAAATGGCTTAGTCCCTATGTTAAGGGTGTACAACAATACTGCAAGATATG 358182 Query 363812 TCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATG 363871 |||| || || ||| || | ||| || |||||||| ||| | || || |||| Sbjct 358181 TCGATCAAGGCGGAAATAAAAGACCAGGTGCATTTGCTATTTATTTAGAACCATGGCATG 358122 Query 363872 CCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCAC 363931 | ||||||||||| ||| | || || || || || || ||||| ||| ||||||| Sbjct 358121 CTGATATTTTTGAATTTTTAGACCTAAAAAAGAATACAGGGAAAGAAGAAGTGCGTGCCA 358062 Query 363932 GTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG--AGGCAGG 363989 | || || |||||||| |||||| || |||| || |||||| | || | | | | | Sbjct 358061 GAGAGCTTTTCTATGCTCTTTGGATTCCTGATTTATTCATGAAGAGAGTAGAAAAGAACG 358002 Query 363990 TAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGA 364049 | |||||| ||| | || || ||| | | ||| || || | || ||||| || Sbjct 358001 --AAAATTGGAGTCTCATGTGTCCTCACAATTCTCCTGGCCTCGCTGACTGCTGGGGAGA 357944 Query 364050 CGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAA-TTC 364108 || | || | || ||| | |||||| ||| ||| | || | |||| ||| Sbjct 357943 AGAATTTGAGAAGTTGTATGAACAATATGAACAAGAGAAGAAGTAT-GTTAAACAAGTTC 357885 Query 364109 CCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATA 364168 ||||| | ||||| || || || || | || | ||||| |||||||| | || Sbjct 357884 GTGCACAAATTTTATGGAAAGCTATAATTGAGGCACAAGTAGAGACTGGAACACCATTTA 357825 Query 364169 TGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGC 364228 || |||| ||||| || || ||| | || ||| || || ||||||| |||||| | Sbjct 357824 TGCTGTATAAAGACTCATGTAACAGAAAAAGCAATCAACAAAACCTTGGCACAATTAAAT 357765 Query 364229 AGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||||| || || || || ||| | ||||||||| Sbjct 357764 GTAGCAATCTCTGCACAGAAATTGTAGAATACACC 357730 Score = 93.3 bits (102), Expect = 1e-13 Identities = 283/430 (66%), Gaps = 8/430 (2%) Strand=Plus/Minus Query 364731 TCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAA 364790 ||| ||||| | || |||||| ||||| || || || || ||||| || || ||||| Sbjct 357259 TCGTAACTCTTTGCTTTTAGCGCCTATGCCTACCGCATCCACAGCACAAATTCTTGGAAA 357200 Query 364791 CAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGA 364850 || || | ||| ||||| |||||| || | ||| | | ||| | || ||||| Sbjct 357199 TAATGAATCCTTTGAACCTTTTACATCAAACATATATCAGAGAAGAGTTTTGTCAGGAGA 357140 Query 364851 ATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG-CTGTGGGGTG 364909 ||||| ||||| || | | || | || ||| || || || | || |||| || Sbjct 357139 ATTTCAAGTAGTGAACCATCATCTTTTGAAAGAT-TTAACGCAAGCAGATCTATGGGATG 357081 Query 364910 ACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTC 364969 | |||||| ||| |||||| |||||||| | || || || | || ||| Sbjct 357080 AAGACATGAAAAACCTTATCATTCATAACAATGGTTCAATTCAAAATATCGAAAGAATTC 357021 Query 364970 CAGAAGATCTGA-AGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT 365028 || |||| | || || | |||||||| || ||||||||||| | ||| || Sbjct 357020 CAAAAGAAATACGAGACT-TATACAAAACAGTCTGGGAAATTTCAGTTAAAACGACGATC 356962 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG 365088 | ||||| || ||| | || || ||||| ||| |||||||| ||||| |||||||| Sbjct 356961 CAAATGGCAGCTGATAGGGGCGCATTTATTGATCAAAGCCAGTCTTTTAA--TATTCATG 356904 Query 365089 --ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTC 365146 || | |||| | | || | ||||| || ||||| | | |||||| || | Sbjct 356903 TTGCTGAACCAAATTATGGAAAATTGACATCTATTCATTTTCATGCATGGAAAATGGGGC 356844 Query 365147 TTAAGACAGG 365156 |||| || || Sbjct 356843 TTAAAACTGG 356834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303230894146136