Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq326 215 4e-51 seq53 98.7 9e-16 >seq326 Length=503882 Score = 215 bits (238), Expect = 4e-51 Identities = 898/1387 (65%), Gaps = 35/1387 (3%) Strand=Plus/Plus Query 55650 AATAAAGGCGGTCGATATATAATGACCGTAAAGCTATGCAACTCGGACGGATGCACTTCG 55709 || ||||| ||||| ||||| ||| || |||| || ||| ||||| |||| ||| Sbjct 280286 AAGAAAGGTGGTCGCTATATGATGGAAGTCCAGCTTTGTAACAAAGACGGCTGCAGTTCC 280345 Query 55710 AGTCAAGCGGTCGAAGTTGTAATCGCAGATACGGACGGTTCTCATCTTGCTCCGCTCTAT 55769 ||| | || ||| || | | || || || || ||| ||| | | || || || Sbjct 280346 AGTGATCCGACAGAAATTATTGTTGCCGACACAGATGGTAGCCATTTACCACCCCTAGAT 280405 Query 55770 TACGAATATC-AGGAATTAAATCAACCTTTCGAAACGCGAGTCGTGGATAAAATCGTTGC 55828 ||| | | | | ||| | || | || ||| |||| ||| |||| || | |||| Sbjct 280406 TAC-ACTCTGGATGAAAAACATAAGCCATTC-AAACAGACGTC-TGGA-AAGGTTGTTGG 280461 Query 55829 CGCATATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCACTCGAGTTCCCAC 55888 || || ||||| || ||||| ||||||| |||||| | ||| || || | || | Sbjct 280462 TGCTTACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCGTGGACCGTATACCAAT 280521 Query 55889 TCCTAATCTGTCACACATTCTCTACGGATTCATACCGATATGCGGCGGCGACGGCATTAA 55948 || ||| | | || || | ||||| || || ||||| || || || || || || || Sbjct 280522 CCCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAA 280581 Query 55949 CGACAGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATCGTGTTCGGGTCG 56008 ||||||| | || || || ||||| ||||| | ||| |||| || || || Sbjct 280582 CGACAGTTTGAAAGAAATTGAGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCG 280641 Query 56009 AGACGACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAAGCCCCAAAAACA 56068 ||| ||||| ||||| || ||||| ||||| |||||||| | ||||| || |||||| Sbjct 280642 AGAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGG 280701 Query 56069 AGTGACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAATTGATGGCAGCTAAACT 56128 | | | | ||||| ||||||||||||||||||||||| || |||||| | |||| Sbjct 280702 ACTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACA 280761 Query 56129 GGCGAATCCCCATGTTAAAGTGCTGCCTTCGATCGGTGGCTGGACTTTATCCGATCCGTT 56188 || | || || | || | || ||||| || || || ||||| | | ||||| || Sbjct 280762 AGCAAGACCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATT 280821 Query 56189 CTTTTACTTTCACGATGCGGTCAAACGCAAAATTTTTGTCGATTCTGTCGTCGAGTTTTT 56248 ||| | ||| | || ||| || | ||| | || ||||| || || | Sbjct 280822 CTTCTTCTTCGATGACAAGGTAAAGAGAGCGCGTTTCATTGACTCTGTAAAAGACTTCCT 280881 Query 56249 ACAGACCTGGAAATTTTTCGATGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAGGG 56308 || ||||||||||||||||||||||| ||||| |||||||| || || || || ||||| Sbjct 280882 TCAAACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAAGGG 280941 Query 56309 GGCCAATTCCAACGTCGGCGATGCCGAACGCGATCGCAACACGTACACGATTCTGTTACG 56368 || || | | | || | | || || ||| | | || | | || | | | Sbjct 280942 CGCAAACCCGACACTTGGTGGT-CCTAA--GGATGG--TGAAGTCTATGTTTTATTAATG 280996 Query 56369 A--GATTTACGCGAAGCGCTAGACCGACTAAGCCTCGAAACG---AATCGAACATACGAG 56423 | || | || ||| ||| || | || | |||| | || ||| ||||| Sbjct 280997 AAGGAGCTTCGAGAAATGCTTAACGAATTATCCAATGAAATGGGCAA--GAA-GTACGAA 281053 Query 56424 CTAACCAGCGCCATTAGCGCCGGCGATGACAAAATCACGGTCGTCGACTACACAGCCGCT 56483 |||| || ||||| || || ||||||||| || || ||||||| ||| || Sbjct 281054 TTAACATCAGCTATTAGTGCTGGATGGGACAAAATCCAAGTTGTAGACTACAAAGCTGCG 281113 Query 56484 CAAAAATATTTAGATTATAtttttttGATGACATACGATTTTAAAGGCGCTTGGTCGAAT 56543 || || || | || |||||||| | |||| ||||| ||||| || |||||||| ||| Sbjct 281114 CAGAATTACATGGACCATATTTTTGTTATGAGCTACGACTTTAAGGGTGCTTGGTCCAAT 281173 Query 56544 -AGCGATCTGGGCTATCAGACGACTTTGTACGCGCCTGCGTTTAATCCTAAAGAACACTA 56602 | || | || |||| || | |||| || || | || || | || ||| || Sbjct 281174 GATACAT-TAGGTCATCAAACCGCACTGTATGCTCCCGAGTGGAACTCAAAGGAAACTTA 281232 Query 56603 TACGACCGATTTTGCGGTTC-GTGCTCTGCTTAAACAAAAAGTCGAGAATAAAAAGATTG 56661 ||| || || || | |||| || | || | ||| || | || || |||| Sbjct 281233 TACCACAGACTTCGGTGTTCAGTAC-CTATTGGCTCAAGGTGTAAACCCGAAGAAAATTG 281291 Query 56662 TAGTCGGCGTAGCTATGTACGGTCGCGGGTGGACCGGCGTCGGTGATTTCGTCGACA-AA 56720 | || || || || ||||| || || ||||||||||| || || | ||| | Sbjct 281292 TCGTAGGTGTTGCAATGTATGGACGTGGGTGGACCGGAGTACACAAT----TATACAGAT 281347 Query 56721 AACAATCCATTTTCCGGCACGGCCAAGGGACCTGTCAAAGGTACCTGGGAAGACGGAGTC 56780 ||||| || | || | || | |||||| ||| || || ||| | || || || Sbjct 281348 GGTAATCCTTTCACGGGGATCGCAACAGGACCTTGCAAGGGCACATGGCAGGATGGTGTG 281407 Query 56781 GTTGATTTTAGAGAAATTTTCAACT--CTTTTGTGACTAACAAACCGATGGATCGTTACG 56838 || |||| || |||| || ||| | | || | | |||||| | | | |||| Sbjct 281408 GTCGATTACAGGGAAA-TTGCAAATGGCATTGCTCA-AAACAAATGGGAGTTCCACTACG 281465 Query 56839 ATGCTATAGCAAAAGCGTCATACGTTTTTAATAATTCGACAGGTGATCTCATCACTTACG 56898 || | || |||| | || || || || || ||||| || || | || |||| Sbjct 281466 ATAACGTTGCCCAAGCTGCTTATGTGTTCAAACCATCTACAGGGGAACTTGTTACATACG 281525 Query 56899 ACAGTCCCCAG-TCGGTTCTGGATAAAGCAAAGTATGTGTTAGACTACAACTTGGGTGGG 56957 ||| | | || || ||| || |||| || || || | | | || | ||||| Sbjct 281526 ACA-ACGCGAGATCCGTTACCGAGAAAGGTAAATACGTAAGAAAGAATTACCTAGGTGGT 281584 Query 56958 TTGTTTGCGTGGGAAATCGATGCAGATAACGGATTAC-TTTTAAACGCAATGAATAGTGG 57016 ||||| ||||||||||| || ||||||||||| | || | || ||||||||||| | | Sbjct 281585 TTGTTCGCGTGGGAAATAGACGCAGATAACGG-TGACATATTGAACGCAATGAACATGGC 281643 Query 57017 TCTTGGT 57023 ||| ||| Sbjct 281644 TCTAGGT 281650 >seq53 Length=2198565 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || |||||| | || || ||| | || ||| | ||||| || ||| Sbjct 1830757 AATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTC 1830816 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | |||||| || ||| ||||| ||||| || || || || || Sbjct 1830817 TGACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 1830876 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | || || | | || ||||| | ||||||| | | | | | || || || Sbjct 1830877 GCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAA 1830936 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||| ||||| ||| ||||| | |||||| | | || |||||| Sbjct 1830937 CATTCAAAAGGAATCAACACTTCATCTTGTGTTACGTCTCAGGGGAGGA 1830985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429897497618940