Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq326 215 4e-51 seq129 147 2e-30 seq53 91.5 1e-13 >seq326 Length=503882 Score = 215 bits (238), Expect = 4e-51 Identities = 542/815 (67%), Gaps = 9/815 (1%) Strand=Plus/Plus Query 32237 CCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGACTAAAC 32296 || ||||| | ||||| |||||||| ||||| || ||||| || || || ||| | ||| Sbjct 280523 CCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAAC 280582 Query 32297 GATGCCCTCAAAACGATACCGGGCAGTTTTGAGGCGCTGCAACGTTCGTGCAAAGGCCGC 32356 || | ||| || ||| ||||| | ||| | || | || |||| ||||| Sbjct 280583 GACAGTTTGAAAGAAATTGAGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCGA 280642 Query 32357 GCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGCAGAAGGGC 32416 | ||||||||| || ||||||||||||| ||||| || |||||||||| || || || Sbjct 280643 GAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGGA 280702 Query 32417 GTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGGCCAAGTTG 32476 | ||| | ||||| ||||| |||||||||||||||||||| |||||| | || Sbjct 280703 CTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACAA 280762 Query 32477 GCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGGATCCCTTT 32536 |||| ||| | |||| ||| | || ||||||||||| ||||| | | ||||| || Sbjct 280763 GCAAGACCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATTC 280822 Query 32537 TATTTTATGCACGACGCGG-AAAAACGGCACGTGTTTGTCGATTCCGTCAAAGAGTTTTT 32595 | || | | ||| || ||| | || ||| || | || || || ||||| || | Sbjct 280823 TTCTTCTTCGATGACAAGGTAAAGAGAGCGCGT-TTCATTGACTCTGTAAAAGACTTCCT 280881 Query 32596 ACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGGCGGCAAAGG 32655 || |||||||| || || || || ||||| || ||||| ||||| || || || || Sbjct 280882 TCAAACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAAGGG 280941 Query 32656 TGCCAACCCGGCGCTCGGTAACGGGGAGCGCGACGCGCACACGTACATTATTTTGTTACA 32715 || |||||| | || ||| || || | | || || | || | | Sbjct 280942 CGCAAACCCGACACTTGGT---GGTCCTAAGGATGGTGAAGTCTATGTTTTATTAATGAA 280998 Query 32716 AGAATTGCGTTCTATGCTGGACGACCT-TCAATTGCAAACGGGCAAAACGTACGAGTTGA 32774 || | || ||||| |||| | || | || ||| |||||| | |||||| || | Sbjct 280999 GGAGCTTCGAGAAATGCTTAACGAATTATCCAATG-AAATGGGCAAGAAGTACGAATTAA 281057 Query 32775 CTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGAAGCCGCGCAAA 32834 | || |||||||| || |||||||| || || | || |||| ||||| | Sbjct 281058 CATCAGCTATTAGTGCTGGATGGGACAAAATCCAAGTTGTAGACTACAAAGCTGCGCAGA 281117 Query 32835 AGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGGTCTAA-CACC 32893 | ||| | || | || ||| | ||||| ||||||||||| || || ||||| || | Sbjct 281118 ATTACATGGACCATATTTTTGTTATGAGCTACGACTTTAAGGGTGCTTGGTCCAATGATA 281177 Query 32894 GATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGAATTGTACACC 32953 ||| || | |||| ||| | |||| ||||| ||||| | | ||| || ||| Sbjct 281178 CATTAGGTC-ATCAAACCGCACTGTATGCTCCCGAGTGGAACTCAAAGGAAACTTATACC 281236 Query 32954 ACAGATCACGCTGTTAAATTGTTAACAAGTCAAGGTGTAGCTTCTTACAAAATCATTGTC 33013 ||||| || |||| | | || |||||||||| | | ||||| | || Sbjct 281237 ACAGACTTCGGTGTTCAGTACCTATTGGCTCAAGGTGTAAACCCGAAGAAAATTGTCGTA 281296 Query 33014 GGCATCGCCATGTACGGTCGCGGGTGGACGGGCGT 33048 || | || ||||| || || |||||||| || || Sbjct 281297 GGTGTTGCAATGTATGGACGTGGGTGGACCGGAGT 281331 >seq129 Length=3256488 Score = 147 bits (162), Expect = 2e-30 Identities = 183/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 109232 CCAAATACGCAACGGAAGTTGCACGTTTGCGCACTTTTGCAGAATGGCCTCGTGGTTTGA 109291 ||| |||||| | || | ||| ||| | ||||| ||||| || |||||| | || || Sbjct 1155761 CCAGATACGCGTCCGAGGCTGCTCGTCTTCGCACCTTTGCCGATTGGCCTAGAAGTATGC 1155702 Query 109292 AACAGCAACCCGATAAACTAGCCGAGGCCGGGTTTTATTACACGGGCCAGGGCGATAAAA 109351 || | ||||| |||| || || || || |||| |||||||| || ||||| |||| Sbjct 1155701 GCCAAAAGCCCGAAGAACTGGCGGAAGCTGGCTTTTTCTACACGGGTCACGGCGACAAAA 1155642 Query 109352 CCAAATGTTTTTATTGTGACGGCGGTTTGAAAGACTGGGAGGCGGACGATGAGCCGTGGA 109411 ||||||| ||||| ||||| || || |||| |||||||| ||||| | || ||| Sbjct 1155641 CCAAATGCTTTTACTGTGATGGGGGCCTGAAGGACTGGGAAAATGACGACGTCCCATGGG 1155582 Query 109412 AACTGCACGCGCGTTGGTTTGACCGTTGCCCTTACGTGTTGCTTGTTAAGGGTCGAGATT 109471 | | ||||| |||||||||||||| ||| ||||||| | | || || ||||| || | Sbjct 1155581 AGCAACACGCCCGTTGGTTTGACCGATGCGCTTACGTCCAGTTAGTGAAAGGTCGCGACT 1155522 Query 109472 ATGTGCAAAAA 109482 | || || ||| Sbjct 1155521 ACGTACAGAAA 1155511 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 109048 GGATTTTATTATTTGGGTCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAAATA 109107 ||||||||||| | |||| ||||||||||||||| ||||| || || || ||||||||| Sbjct 1156011 GGATTTTATTACCTCGGTCACGGCGACGAAGTGCGTTGCGCCTTCTGTAAGGTGGAAATA 1155952 Query 109108 ATGCGTTGGCTTGAGGGTGACGACCCAGCGGTTGACCATAAAAGATTAGCGCCACAGTGT 109167 ||| | ||| | ||||| || |||||||| || |||| | | ||||| |||||| Sbjct 1155951 ATGAGATGGGTCGAGGGAGATGACCCAGCTCAGGATCATAGTCGCTGGGCGCCGCAGTGT 1155892 Query 109168 CCGTT 109172 || || Sbjct 1155891 CCCTT 1155887 >seq53 Length=2198565 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || ||||| ||||| || |||||||| ||| | ||| ||| || Sbjct 1830757 AATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTC 1830816 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | | || ||| |||||| || || ||||| | || || || Sbjct 1830817 TGACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 1830876 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| | || || | ||| || || || || ||||||| | ||| | | || || || Sbjct 1830877 GCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAA 1830936 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTT 115497 ||||||||| || || || | ||| | ||||| Sbjct 1830937 CATTCAAAAGGAATCAACACTTCATCTTGTGTT 1830969 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 115280 TTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG 115339 || |||||||| || || || ||||| || |||||||||||||| || | ||| || Sbjct 1830524 TTTAAAATGCAGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTGAA 1830583 Query 115340 TCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 | ||||| ||| | | || ||| ||||| || || ||||| | || Sbjct 1830584 CCTTCAGACACCATTGAAAATGTTAAAGCTAAAATCCAGGACAAGGAAGGTATTCCACCA 1830643 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 || |||||| | || || | ||| || || || || ||||||| | ||| | | || Sbjct 1830644 GACCAGCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGAC 1830703 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || ||||||||||| ||||| || | ||| | ||||| | | ||||||||| Sbjct 1830704 TACAACATTCAAAAGGAGTCAACACTTCATCTTGTGTTACGTCTCAGAGGAGGAA 1830758 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| ||||| || || ||||||||||| || | || || | Sbjct 1830985 AATGCAAATTTTTGTTAAAACACTGACAGGAAAAACCATCACATTGGAGGTTGAACCTTC 1831044 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | | || ||| ||||| || || ||||| | || ||| || Sbjct 1831045 AGACACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCA 1831104 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| | ||||| | || || || ||||| ||||||| | ||| || | || || || Sbjct 1831105 GCAACGTCTTATCTTCGCTGGAAAGCAATTGGAAGATGGCCGAACGCTGTCAGACTACAA 1831164 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||||||||| || || || Sbjct 1831165 CATTCAAAAGGAATCAAC 1831182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425305908849760