Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq401 100 3e-16 seq53 96.9 3e-15 >seq401 Length=384550 Score = 100 bits (110), Expect = 3e-16 Identities = 472/744 (63%), Gaps = 17/744 (2%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 || || || || ||||| || || | ||| || | | | ||| | ||| || || || Sbjct 357122 TGGTTCACTACTTGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAA 357181 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 |||||||| || || ||||| || || ||||| || || | |||||| ||||| ||| Sbjct 357182 GGTTCAAAGGATTCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCT 357241 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | | || || || || || ||||| || || | || ||||| | | |||||| | Sbjct 357242 AAAAGCAAAGAGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTC 357301 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 || || || || | | |||||| || || |||||||| || | ||| | ||| Sbjct 357302 CAAAGGTCCGTAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGG 357361 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCA 145352 || || ||||| |||||| | | || |||| || | || || || || || | Sbjct 357362 CTATTTTTAAAGGTACTGTA--TACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTA 357419 Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412 || || ||||||| ||||| ||||| || | || || | || || | Sbjct 357420 AGGCTCCATAATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCACTTT 357479 Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472 | || || |||| | || || | ||| || | || || | || | || || | Sbjct 357480 CATATGGATAACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTG 357539 Query 145473 GCCGATGTTTCATGTTGC-----TCATCCTCGCCGACTCGATAGGATATCGATTACGGTC 145527 | | ||| ||||||| | | | || ||| ||||| | || || || Sbjct 357540 GTCTGTGTCTCATGTTTGAATTTTTAGCTTCTGGAACTGGATAGTAATTC----ACA-TC 357594 Query 145528 GATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTC 145587 |||||||| || || ||| | | | || || | | | ||||||||||| | Sbjct 357595 AATAATTTTGTTTAAATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATT 357654 Query 145588 AAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 | || ||| ||| | ||| | |||| || || || || |||||||| || Sbjct 357655 GTAAGTTTTGTCTTCATTGACAA-ACA--TGTTGAGAGCTATTGATGCTAAATTACAGAC 357711 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGAT 145707 ||| || || | | |||||| ||| || || | ||| | |||||||||||| || Sbjct 357712 AGCCACTTCATCTTCCGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAAT 357771 Query 145708 GGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 || || || ||||| ||||| ||||| ||||| || | ||| || || ||||| | || Sbjct 357772 TGTGCCAAGGTTTTGTTGATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGG 357831 Query 145768 TCCGCCAGTCTCCACCTGCGTCTC 145791 | |||||||| || || | ||| Sbjct 357832 TGTTCCAGTCTCTACTTGTGCCTC 357855 >seq53 Length=2198565 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| | ||| | ||| | || |||||||||||||||||||| || | |||||| Sbjct 1830745 ACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCC 1830686 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || || | |||||| || || |||| | ||| |||||||| || || || ||||| || Sbjct 1830685 ATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTT 1830626 Query 131139 GTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 ||| |||||| |||| | | | || | || || | | || | || | || | Sbjct 1830625 GTCCTGGATTTT-AGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGA 1830567 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||| || || |||||||||||||| |||||||| Sbjct 1830566 TGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| | ||| | ||| | || || ||||||||||||||||| || | |||||| Sbjct 1830973 ACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCC 1830914 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || || | |||||| || || |||| | ||| |||||||| || || || ||||| || Sbjct 1830913 ATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTT 1830854 Query 131139 GTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 ||| ||| ||| || |||| | || | || || | || || | || | ||| | Sbjct 1830853 GTC-TTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGA 1830795 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||| || || || ||||| |||||||| ||||| Sbjct 1830794 TGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| || || | ||| | ||| || ||||||||||||||||| || Sbjct 1831213 GCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGA 1831154 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || | ||||| || ||| |||| | ||| |||||||| || || Sbjct 1831153 CAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTGG 1831094 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 || ||||| ||||| |||||| |||| | | | || | || || | | || | Sbjct 1831093 AATACCTTCCTTGTCTTGGATTTT-AGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAA 1831035 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || || ||||| || ||||| ||||| Sbjct 1831034 CCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCAT 1830986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471969445624320