Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq326 289 2e-73 seq429 98.7 8e-16 >seq326 Length=503882 Score = 289 bits (320), Expect = 2e-73 Identities = 791/1195 (66%), Gaps = 35/1195 (3%) Strand=Plus/Minus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 || ||||| || || | | || || || || |||||||||||||| || |||||||| Sbjct 281640 ATGTTCATTGCGTTCAATATGTCACCGTTATCTGCGTCTATTTCCCACGCGAACAAACCA 281581 Query 95889 CCTAACTTGTTTTGTTCCACATATCGACCTTTAGCTATAACAGAATCAACACTATCATAT 95948 |||| | || | | || ||| |||||| | |||| || | | || ||| Sbjct 281580 CCTAGGTAATTCTTTCTTACGTATTTACCTTTCTCGGTAACGGATCTCGCGTTGTCGTAT 281521 Query 95949 GAAATTAAATCGCCTTTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCAAAT 96008 | || | || ||| | | | | || || || || |||| || ||||| || | Sbjct 281520 GTAACAAGTTCCCCTGTAGATGGTTTGAACACATAAGCAGCTTGGGCAACGTTATCGTAG 281461 Query 96009 TTAACAATATATTTGTTT------ATTTCGTTTTTGATTTGGCGATAATCAACAACGCCA 96062 | | |||||||| || | ||| |||| | ||||| || || ||| Sbjct 281460 TGGAACTCCCATTTGTTTTGAGCAATGCCATTTGCAATTTCCCTGTAATCGACCACACCA 281401 Query 96063 TCTTCCCAAGTGCCC--GAAACGGGCCCGTTACTACTTCCCAAAAAATAGTTATCGTTTT 96120 || | ||| |||||| | || || || ||| | | | ||| ||| ||| | | | Sbjct 281400 TCCTGCCATGTGCCCTTGCAA-GGTCCTGTTGCGA-TCCCCGTGAAAGGATTACCATCTG 281343 Query 96121 CGTAATTTGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGC 96180 ||||| ||||| ||||| || || || ||||| || || || || | |||||| Sbjct 281342 TATAATTGTGTACTCCGGTCCACCCACGTCCATACATTGCAACACCTACGACAATTTTCT 281283 Query 96181 GCGGGTCCACGCCTTGATTTGTGAGCAATTTAACGGCATGGTCCGTGTTGTACAGCTCGT 96240 ||||| || |||||| || | | ||| | ||| ||| | || || | Sbjct 281282 TCGGGTTTACACCTTGAGCCAATAGGTACTGAACACCGAAGTCTGTGGTATAAGTTTCCT 281223 Query 96241 TTGGGTTCCAACTCGGC-GCGTACAGTGTAGTTTGGTATCCCAA---ATCAATGTTTGAC 96296 ||| |||||| ||||| || ||||||| ||||| | || || |||| || ||| Sbjct 281222 TTGAGTTCCA-CTCGGGAGCATACAGTGCGGTTTGATGACCTAATGTATCATTG---GAC 281167 Query 96297 CACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACG 96356 || || || ||||| ||||||||||| | ||| || | ||| | | | || |||||| | Sbjct 281166 CAAGCACCCTTAAAGTCGTAGCTCATAACAAAAATATGGTCCATGTAATTCTGCGCAGCT 281107 Query 96357 TCGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTAC 96416 | ||| | ||| || |||||||| || ||||| || || ||| || |||||| Sbjct 281106 TTGTAGTCTACAACTTGGATTTTGTCCCATCCAGCACTAATAGCTGATGTTAATTCGTAC 281047 Query 96417 GTTTTGCCCGTTTGCAGTTGC-AACTCGTCTAACATCACGCGCAATTCCTT---TAATAG 96472 | |||||| ||| || | | || |||| | ||| | || | ||||| ||||| Sbjct 281046 TTCTTGCCCATTT-CATTGGATAATTCGTTAAGCATTTCTCGAAGCTCCTTCATTAATAA 280988 Query 96473 AATGTTGTACGTGTCAGCGTCGCGCTCTTTGTTGC--CGAGCGTCGGGTTGGCGCCTTTA 96530 || | | || | || | || ||| | | | || |||||||| ||||| ||| Sbjct 280987 AACATAG-ACTT--CACCATC-----CTTAGGACCACCAAGTGTCGGGTTTGCGCCCTTA 280936 Query 96531 CCGCCCGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAAT 96590 || || || ||||||||||| ||||| || || |||||||||||||| || | || Sbjct 280935 CCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTCCAGGTTTGAAGGAAG 280876 Query 96591 TCTCTGACGGAGTCTACAAACACGCGCCGTTTTT-CCGCGTCGTGCATGTAATAGAACGG 96649 ||| | || ||||| | || |||||| | ||| || ||| | | | | |||| || Sbjct 280875 TCTTTTACAGAGTCAATGAA-ACGCGCTCTCTTTACCTTGTCATCGAAGAAGAAGAATGG 280817 Query 96650 GTCGGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTT 96709 || | || ||||| ||||| ||||| || ||||| || || | || | || |||| Sbjct 280816 ATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCAGGTCTTGCTTGTTT 280757 Query 96710 GGCCGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTT 96769 | ||||||||| ||||||||||||||||| || || ||||| | ||| | || || Sbjct 280756 TAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAAAGTCCTTT 280697 Query 96770 TTGCGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCC 96829 ||| |||||||||| || ||||| ||||||||||| | |||||||| ||| ||||| Sbjct 280696 TTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTCTTCTCGGCC 280637 Query 96830 CTGGCAAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGGCATCGTTAAG 96889 |||||| | || | ||||| ||||| || || ||| | ||||| | Sbjct 280636 ACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTTTCAAACTGTCGTTGAT 280577 Query 96890 GCCGTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGG 96949 || || || |||||||| || ||||| |||||||| | ||| | || || || | || Sbjct 280576 TCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTAAATTCGGGATTGG 280517 Query 96950 CACTTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGCA 97004 | |||||| ||| | || | | ||| || |||||||| ||||| || ||| Sbjct 280516 TATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCAACAAAGTAAGCA 280462 >seq429 Length=186180 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || ||||| || ||||||| |||| || || || || ||||| || ||||| |||||| Sbjct 15715 TAACCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCG 15656 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | || ||| | || || | |||||| || || |||| | ||||||||||| Sbjct 15655 GACAGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGT 15596 Query 16826 GGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||||| || || || || || |||||| | | | ||||||| || || Sbjct 15595 GGGATTCCCTCCTTATCCTGGATCTTGGC--CTTCACATTTTCGATAGTGTCGGAGGCCT 15538 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || | ||||||||| || || || || ||||| ||||| |||||||| || Sbjct 15537 CCACCTCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATGTT 15483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405051722850520