Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq94 172 4e-38 seq53 120 2e-22 seq714 84.2 1e-11 >seq94 Length=616059 Score = 172 bits (190), Expect = 4e-38 Identities = 131/155 (85%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||||| || | ||||| || || ||||||||||||||||||||||||||||| |||||| Sbjct 225659 ATGGGGTCCTTAAACGTGAACCGGAATGTGGCGGACGCGTTCTACCGCTACAAGATGCCG 225718 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||||||||||||||||| ||||| ||||| || || || || || ||||| ||||||||| Sbjct 225719 CGCATCTGCGCCAAGGTTGAGGGGAAGGGGAATGGCATCAAGACTGTCATCGTCAACATG 225778 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCAC 6316 || || || |||||||| ||||| |||||||| Sbjct 225779 ATCGAGGTGGCCAAGGCGCTAGGACGACCTGCCAC 225813 Score = 141 bits (156), Expect = 6e-29 Identities = 131/166 (79%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 6436 GCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTG 6495 |||| || ||||| || |||||||||| ||| ||||| ||||| ||||| ||||| || | Sbjct 227133 GCTTCATCCGCAAATTCGTGCTGTGTCCGGAGTGCGACAACCCAGAGACGGAGCTGATCG 227192 Query 6496 TGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGC 6555 |||| || ||| | ||||| || || ||||| ||||| || || || ||||| ||| ||| Sbjct 227193 TGTCGACGAAGCGCAACACGATATCGCAGGGTTGCAAGGCTTGTGGGTACCACGGCCAGC 227252 Query 6556 TGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 | || || ||||| |||||||||||||| || ||||| ||||| Sbjct 227253 TCGACTTCAACCACAAGCTCAACACCTTCATCCTCAAGAACCCTCC 227298 >seq53 Length=2198565 Score = 120 bits (132), Expect = 2e-22 Identities = 175/245 (71%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| | ||| ||||| | |||||| || |||||||||||| ||||| | Sbjct 1830760 CATT-CCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGT 1830702 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | || | || || || || ||||| ||||| || || ||||| || || | Sbjct 1830701 CTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTG 1830642 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| |||||| ||||| || ||||| | | || ||| | || Sbjct 1830641 GTGGAATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTT 1830582 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACA 38325 ||||||||||||| || ||||| ||||| | ||||| ||||| ||||||| ||||| | Sbjct 1830581 CAACTTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCA--TTTTAAA 1830524 Query 38326 AGCTC 38330 || || Sbjct 1830523 AGATC 1830519 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 ||| |||||||||| ||| | || | ||| ||| || | ||||||||||| ||||| | Sbjct 1831216 ATTGCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGAT-TCCTTTTGAATGTTGTAGT 1831158 Query 38146 CAGACAAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 | |||| |||||| || || ||||| ||||| || || || || ||||| || Sbjct 1831157 CTGACA----GCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGG 1831102 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | || | ||||| ||||| ||||| || ||||| | | || ||| | Sbjct 1831101 TCAGGTGGAATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAA 1831042 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || ||||| || ||||| || |||| ||||| || || || ||||| Sbjct 1831041 GGTTCAACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCAT 1830986 >seq714 Length=437450 Score = 84.2 bits (92), Expect = 1e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 102516 ATTGATCCCCAACCATTGGAATACAAATAAGCGGTATTTCGCTATCGACAGCTTCGTCCA 102575 |||| || |||| |||||| |||| ||||| |||| || || | |||||| ||| Sbjct 432030 ATTGGTCTCCAAGCATTGGTATACCTATAAGTGGTACACCGGCATTCATAGCTTCATCCG 432089 Query 102576 CAGATTGAACACCTCCTTGTGTTATAAATAATTTTACATTGGGATG 102621 || |||| ||||||||| |||||||||||||||| ||| ||||| Sbjct 432090 TCGACTGAAGACCTCCTTGGGTTATAAATAATTTTATATTTGGATG 432135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334917204222188